# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i45A 387 2.43e-28 3i09A 375 1.13e-27 1peaA 385 2.35e-27 c.93.1.1 35662 3hutA 358 3.93e-27 1usgA 346 4.29e-27 c.93.1.1 99864 1pea 385 4.76e-27 2liv 344 1.45e-26 3h5lA 419 3.58e-26 1z15A 344 5.63e-26 3lkbA 392 1.24e-25 3lopA 364 2.29e-25 3eafA 391 3.34e-24 3ks9A 496 2.46e-17 3lmkA 492 2.62e-17 1ewkA 490 1.44e-14 c.93.1.1 35712 1dp4A 435 3.55e-13 c.93.1.1 35710 1jdpA 441 1.04e-12 c.93.1.1 62906 2e4uA 555 1.52e-12 3h5vA 394 1.39e-11 3h6gA 395 1.84e-11 2wjwA 388 5.71e-11 3ckmA 327 3.05e-10 c.93.1.1 156739 3jpwA 363 2.88e-09 1jx6A 342 0.000455 c.93.1.1 67406 3gbvA 304 0.000784 2rjoA 332 0.000840 3l49A 291 0.001274 3d02A 303 0.001549 1tjyA 316 0.001992 c.93.1.1 107062 2h3hA 313 0.003063 3ksmA 276 0.003763 3brsA 289 0.004209 2qvcA 313 0.004795 3c6qA 311 0.004887 3g1wA 305 0.005269 3ejwA 315 0.007995 2dri 271 0.01105 3l6uA 293 0.01177 2vk2A 306 0.01898 8abp 306 0.01935 1jftA 340 0.02090 a.35.1.5,c.93.1.1 66652,66653 1jyeA 349 0.02468 c.93.1.1 67455 1gca 309 0.02751 1tlfA 301 0.03158 c.93.1.1 35687 2driA 271 0.03357 c.93.1.1 35637 8abpA 306 0.03364 c.93.1.1 35647 1dbqA 289 0.04166 c.93.1.1 35666 3lkvA 302 0.04325 1efaA 333 0.05834 a.35.1.5,c.93.1.1 17106,35691 1vpwA 340 0.06352 a.35.1.5,c.93.1.1 17087,35680 2ioyA 283 0.06393 1qpzA 340 0.06549 a.35.1.5,c.93.1.1 17097,35673 3e3mA 355 0.06709 2fvyA 309 0.07032 c.93.1.1 134227 3brqA 296 0.1001 3ctpA 330 0.1140 3h5oA 339 0.1177 2qh8A 302 0.1219 3kjxA 344 0.1308 2qu7A 288 0.1315 3c3kA 285 0.1364 1gudA 288 0.1402 c.93.1.1 83326 2iksA 293 0.1418 3egcA 291 0.1526 3bilA 348 0.1564 2o20A 332 0.1722 3d8uA 275 0.1755 2fn9A 290 0.1865 2fepA 289 0.1939 1bykA 255 0.2994 c.93.1.1 35706 3lftA 295 0.3338 3gv0A 288 0.3418 3cs3A 277 0.3809 3g85A 289 0.3917 3jy6A 276 0.4514 2rgyA 290 0.4694 3h75A 350 0.4923 3jvdA 333 0.5514 3e61A 277 0.7520 3k4hA 292 0.8238 3huuA 305 0.8437 3k9cA 289 1.045 3bblA 287 1.155 3hs3A 277 1.581 3gybA 280 1.761 3hcwA 295 1.818 2dgdA 223 1.902 2q9uA 414 2.755 3dg9A 248 2.766 3kkeA 303 3.038 1bmtA 246 3.129 a.46.1.1,c.23.6.1 17757,31235 1k7yA 577 3.208 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 3clkA 290 3.516 1o5kA 306 3.966 c.1.10.1 92504 1reqA 727 4.790 c.1.19.1,c.23.6.1 29620,31247 1xkyA 301 5.065 c.1.10.1 122094 2vlbA 251 5.374 3h5tA 366 5.511 5reqA 727 5.938 c.1.19.1,c.23.6.1 29632,31259 3dtvA 240 6.153 3ixmA 240 6.201 2qipA 165 6.432 3ixlA 240 7.442 2a6nA 292 7.707 c.1.10.1 126289 2a6lA 292 7.976 c.1.10.1 126285 2fqxA 318 8.943 2i2xB 258 9.226 1dhpA 292 9.299 c.1.10.1 29097 1j0aA 325 9.653 c.79.1.1 83871 2hqbA 296 9.657 1wbhA 214 10.98 c.1.10.1 120845 1mejA 223 13.26 c.65.1.1 79029 2q5cA 196 13.39 3f4wA 211 13.71 2vvpA 162 14.78 c.121.1.1 153645 1fwrA 213 15.24 c.1.10.1 29164 1meoA 209 15.24 c.65.1.1 79035 1e5dA 402 15.79 c.23.5.1,d.157.1.3 31208,42061 1qkkA 155 16.57 c.23.1.1 31104 1uslA 170 17.12 c.121.1.1 99871 2rfgA 297 17.53 1nal1 297 18.31 3cprA 304 19.68 1jkxA 212 19.82 c.65.1.1 66813 2pjuA 225 20.19 c.92.3.1 149579 3he8A 149 20.58 1vhcA 224 20.78 c.1.10.1 100661 2hmcA 344 21.00 2qvgA 143 21.13 1f74A 293 22.32 c.1.10.1 29079 3daqA 292 22.99 1ir6A 424 23.06 c.107.1.2 71342 3fluA 297 23.29 1u0sY 118 23.88 c.23.1.1 107566 3fkrA 309 23.88 1y80A 210 24.03 2yxbA 161 24.61 2gar 212 24.97 1fyeA 229 25.66 c.23.16.4 31477 2atsA 292 26.08 c.1.10.1 127306 3h5dA 311 26.50 1y81A 138 28.39 c.2.1.8 122731 1iukA 140 28.62 c.2.1.8 83712 3iv7A 364 28.70 1c30B 382 28.79 c.8.3.1,c.23.16.1 30736,31413 3a24A 641 28.88 1z7yA 322 29.44 c.79.1.1 124679 1ccwA 137 30.30 c.23.6.1 31238 2wkjA 303 31.09 1vmeA 410 31.23 c.23.5.1,d.157.1.3 108893,108894 2vvrA 149 31.84 2r8wA 332 32.24 1vchA 175 33.20 c.61.1.1 119980 3fkkA 309 33.71 2egzA 219 34.16 1cb0A 283 35.83 c.56.2.1 33790 1hl2A 297 36.02 c.1.10.1 83581 2zxrA 666 36.20 1vljA 407 36.28 e.22.1.2 108832 1w3iA 293 37.29 c.1.10.1 109152 1fdyA 297 37.94 c.1.10.1 29071 2nuwA 288 38.05 2bdqA 224 38.81 2r91A 286 39.75 1v93A 296 40.20 c.1.23.1 100532 1wab 232 42.24 1l6wA 220 43.50 c.1.10.1 73632 3l4yA 875 44.32 3bi8A 291 44.54 1o1xA 155 44.97 c.121.1.1 86553 1ta9A 450 45.81 1c3oB 382 45.95 c.8.3.1,c.23.16.1 30744,31421 3iebA 218 46.46 1a9xB 379 46.54 c.8.3.1,c.23.16.1 30732,31409 3eb2A 300 48.45 2ehhA 294 48.97 1s3iA 310 49.42 b.46.1.1,c.65.1.1 98435,98436 1vimA 200 51.58 c.80.1.3 100758 1kgsA 225 51.69 a.4.6.1,c.23.1.1 68596,68597 1vizA 240 51.85 c.1.4.1 100784 2purA 292 52.21 2v9dA 343 52.50 1uxoA 192 52.51 c.69.1.31 108121 3lppA 898 52.70 1i7qB 193 54.72 c.23.16.1 61902 1ab6A 125 54.77 c.23.1.1 31054 2ixdA 242 55.05 1i1qB 192 55.54 c.23.16.1 61544 2ojpA 292 55.76 1p1mA 406 56.56 b.92.1.4,c.1.9.9 87696,87697 1jq5A 370 56.59 e.22.1.2 67084 3hebA 152 58.26 1fbnA 230 59.31 c.66.1.3 34181 3bzbA 281 60.70 1yl5A 247 61.55 c.2.1.3,d.81.1.3 123617,123618 3jr2A 218 61.80 1fmtA 314 64.36 b.46.1.1,c.65.1.1 25758,34174 1yxyA 234 64.66 c.1.2.5 124203 1ab5A 125 65.52 c.23.1.1 31056 3d0cA 314 66.16 2r25B 133 66.61 c.23.1.1 151530 1e6uA 321 67.82 c.2.1.2 29805 2hoqA 241 68.43 3kzxA 231 71.76 1u8tA 129 73.64 c.23.1.1 113192 1dc7A 124 73.76 c.23.1.1 31093 1qfeA 252 73.78 c.1.10.1 29167 3i6iA 346 74.66 1gqnA 252 75.19 c.1.10.1 90514 1j6pA 418 78.64 b.92.1.4,c.1.9.9 77089,77090 3ce9A 354 78.71 3hl0A 353 79.02 2d59A 144 79.72 c.2.1.8 131266 2whxA 618 80.51 1xi3A 215 81.09 c.1.3.1 109601 3kbbA 216 81.63 2blnA 305 82.26 b.46.1.1,c.65.1.1 128734,128735 3e96A 316 82.47 2bw0A 329 82.71 b.46.1.1,c.65.1.1 129303,129304 1db3A 372 83.00 c.2.1.2 29813 1tmyA 120 83.19 c.23.1.1 31083 1nvmA 345 84.14 a.5.7.1,c.1.10.5 86249,86250 3ciwA 348 88.06 1p9lA 245 88.58 c.2.1.3,d.81.1.3 94393,94394 2h0aA 276 88.95 1f4pA 147 89.01 c.23.5.1 59651 1ys4A 354 89.61