# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i45A 387 1.17e-29 3i09A 375 5.58e-29 1peaA 385 1.81e-28 c.93.1.1 35662 3hutA 358 1.87e-28 1usgA 346 2.58e-28 c.93.1.1 99864 1pea 385 2.87e-28 3h5lA 419 1.10e-27 2liv 344 1.31e-27 1z15A 344 2.04e-27 3lkbA 392 9.07e-27 3lopA 364 1.28e-26 3eafA 391 1.63e-25 3lmkA 492 1.23e-18 3ks9A 496 6.61e-18 1ewkA 490 7.36e-16 c.93.1.1 35712 1dp4A 435 6.31e-14 c.93.1.1 35710 1jdpA 441 2.58e-13 c.93.1.1 62906 2e4uA 555 3.31e-13 3h6gA 395 2.37e-12 3h5vA 394 5.23e-12 2wjwA 388 3.52e-11 3ckmA 327 5.37e-10 c.93.1.1 156739 3jpwA 363 3.03e-09 3l49A 291 0.000319 3ksmA 276 0.000840 3gbvA 304 0.000848 2rjoA 332 0.001011 1jx6A 342 0.001073 c.93.1.1 67406 2h3hA 313 0.001110 3d02A 303 0.001155 3g1wA 305 0.001206 3brsA 289 0.001383 3c6qA 311 0.002016 2qvcA 313 0.002161 1tjyA 316 0.002969 c.93.1.1 107062 3ejwA 315 0.004495 1gca 309 0.005477 2dri 271 0.007164 8abp 306 0.007564 2fvyA 309 0.01411 c.93.1.1 134227 2driA 271 0.01426 c.93.1.1 35637 8abpA 306 0.01509 c.93.1.1 35647 3l6uA 293 0.01578 2vk2A 306 0.01884 1tlfA 301 0.02212 c.93.1.1 35687 1jyeA 349 0.02921 c.93.1.1 67455 1dbqA 289 0.03193 c.93.1.1 35666 1jftA 340 0.03764 a.35.1.5,c.93.1.1 66652,66653 3h5oA 339 0.05059 3lkvA 302 0.05298 3d8uA 275 0.07100 2ioyA 283 0.07514 1efaA 333 0.07830 a.35.1.5,c.93.1.1 17106,35691 3brqA 296 0.09341 1vpwA 340 0.09472 a.35.1.5,c.93.1.1 17087,35680 3bilA 348 0.1000 3kjxA 344 0.1044 3k4hA 292 0.1050 1qpzA 340 0.1077 a.35.1.5,c.93.1.1 17097,35673 2o20A 332 0.1094 1gudA 288 0.1158 c.93.1.1 83326 3gv0A 288 0.1230 2qh8A 302 0.1297 3ctpA 330 0.1717 2fepA 289 0.1793 3g85A 289 0.1885 3bblA 287 0.1965 2qu7A 288 0.2107 3c3kA 285 0.2252 3e3mA 355 0.2404 2fn9A 290 0.3356 2iksA 293 0.3454 3egcA 291 0.3946 2rgyA 290 0.4190 3kkeA 303 0.4257 3jvdA 333 0.4885 1bykA 255 0.5296 c.93.1.1 35706 3h75A 350 0.5550 3hcwA 295 0.6259 3cs3A 277 0.6363 3gybA 280 0.9083 3huuA 305 1.065 3lftA 295 1.138 3jy6A 276 1.344 3k9cA 289 1.596 3e61A 277 1.622 3h5tA 366 2.347 3hs3A 277 2.562 1k7yA 577 2.612 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 1ab6A 125 3.618 c.23.1.1 31054 2dgdA 223 3.653 1u0sY 118 4.925 c.23.1.1 107566 2q9uA 414 5.087 1wbhA 214 5.329 c.1.10.1 120845 3dg9A 248 5.485 2vlbA 251 5.692 1reqA 727 5.814 c.1.19.1,c.23.6.1 29620,31247 5reqA 727 5.995 c.1.19.1,c.23.6.1 29632,31259 1vhcA 224 6.252 c.1.10.1 100661 2qipA 165 6.392 1bmtA 246 7.072 a.46.1.1,c.23.6.1 17757,31235 3clkA 290 7.211 2q5cA 196 7.249 2i2xB 258 8.111 3ce9A 354 8.253 1kgsA 225 8.481 a.4.6.1,c.23.1.1 68596,68597 3ixmA 240 8.551 2hqbA 296 8.657 1u8tA 129 8.863 c.23.1.1 113192 3dtvA 240 8.916 1rrmA 386 9.110 e.22.1.2 105081 1fwrA 213 9.539 c.1.10.1 29164 1ab5A 125 10.00 c.23.1.1 31056 1qkkA 155 10.05 c.23.1.1 31104 1jq5A 370 10.17 e.22.1.2 67084 1e5dA 402 10.30 c.23.5.1,d.157.1.3 31208,42061 3ixlA 240 10.36 1f74A 293 10.50 c.1.10.1 29079 1ta9A 450 10.89 1vljA 407 11.32 e.22.1.2 108832 2fqxA 318 12.07 1o5kA 306 12.36 c.1.10.1 92504 2r25B 133 13.44 c.23.1.1 151530 1xkyA 301 13.45 c.1.10.1 122094 2vvpA 162 14.76 c.121.1.1 153645 2bdqA 224 15.76 1dhpA 292 15.82 c.1.10.1 29097 2yxbA 161 16.02 1j0aA 325 16.16 c.79.1.1 83871 1y80A 210 16.56 1a04A 215 16.71 a.4.6.2,c.23.1.1 16234,31089 1fyeA 229 16.86 c.23.16.4 31477 3f6cA 134 17.62 1uslA 170 17.69 c.121.1.1 99871 1nal1 297 17.91 2a6lA 292 18.21 c.1.10.1 126285 1cb0A 283 18.37 c.56.2.1 33790 1oxkB 134 18.43 c.23.1.1 93691 1tmyA 120 18.66 c.23.1.1 31083 2a6nA 292 18.89 c.1.10.1 126289 2zayA 147 19.65 3e96A 316 20.31 3eulA 152 20.35 1yvuA 706 20.54 b.34.14.1,c.55.3.10 124120,124121 1e6mA 128 20.74 c.23.1.1 31039 1o2dA 371 20.90 e.22.1.2 86591 3lteA 132 21.64 3f4wA 211 21.78 1y81A 138 22.54 c.2.1.8 122731 1dc7A 124 23.06 c.23.1.1 31093 3lb0A 276 23.14 1c30B 382 23.64 c.8.3.1,c.23.16.1 30736,31413 1jbeA 128 24.15 c.23.1.1 62845 1fdyA 297 25.36 c.1.10.1 29071 2ac7A 235 26.63 c.56.2.1 126543 1vjrA 271 26.70 c.108.1.14 100832 3daqA 292 27.03 1vmeA 410 27.68 c.23.5.1,d.157.1.3 108893,108894 1tv8A 340 27.99 c.1.28.3 107352 3hebA 152 28.01 2h0aA 276 28.71 1w25A 459 28.84 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3a24A 641 29.48 2qvgA 143 29.49 1v93A 296 30.63 c.1.23.1 100532 1mejA 223 30.78 c.65.1.1 79029 1ir6A 424 32.51 c.107.1.2 71342 3chy 128 34.73 1nf2A 268 36.19 c.108.1.10 91849 3m7wA 255 37.18 1mxsA 225 37.39 c.1.10.1 91494 3lmzA 257 38.48 2d59A 144 38.70 c.2.1.8 131266 1l5zA 155 40.33 c.23.1.1 77722 1jpnA 296 40.49 a.24.13.1,c.37.1.10 67039,67040 3loqA 294 40.66 3iv7A 364 40.74 1meoA 209 41.39 c.65.1.1 79035 3he8A 149 42.15 1gqnA 252 42.76 c.1.10.1 90514 2bonA 332 43.15 e.52.1.2 146163 1uxoA 192 43.73 c.69.1.31 108121 3dlbA 685 44.38 3i6iA 346 44.90 3kp1A 763 45.03 1tdj 514 46.01 3ciwA 348 46.22 3iebA 218 46.64 1vlwA 217 47.90 c.1.10.1 108868 2pjuA 225 48.54 c.92.3.1 149579 1wl8A 189 49.27 c.23.16.1 120997 2vvrA 149 49.36 1j8yF 297 50.42 a.24.13.1,c.37.1.10 62747,62748 1bu5A 147 50.62 c.23.5.1 31155 1s8nA 205 50.82 c.23.1.1 105374 1zesA 125 50.86 c.23.1.1 124994 1ys4A 354 51.36 1xngA 268 51.67 c.26.2.1 122186 1iukA 140 52.84 c.2.1.8 83712 2yrxA 451 52.96 2nvaA 372 53.07 1l6wA 220 53.16 c.1.10.1 73632 2hoqA 241 53.19 2zxrA 666 53.26 3gt7A 154 55.37 2oczA 231 56.22 1hl2A 297 57.10 c.1.10.1 83581 3cfyA 137 57.45 1f4pA 147 58.03 c.23.5.1 59651 1ccwA 137 58.51 c.23.6.1 31238 3f7tA 328 59.38 2zcuA 286 59.58 3hltA 266 59.81 1c3oB 382 61.05 c.8.3.1,c.23.16.1 30744,31421 1qfeA 252 61.27 c.1.10.1 29167 1euaA 213 63.19 c.1.10.1 29155 1yxyA 234 63.88 c.1.2.5 124203 1mvoA 136 63.91 c.23.1.1 79513 2yw2A 424 64.11 2wkjA 303 64.37 1amoA 615 64.40 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 3fluA 297 65.03 2pl1A 121 65.63 c.23.1.1 149610 1rqbA 539 66.31 a.5.7.2,c.1.10.5 105057,105058 1jkxA 212 67.51 c.65.1.1 66813 1dz3A 130 68.54 c.23.1.1 31105 1wa3A 205 69.22 c.1.10.1 120802 2ojpA 292 69.51 3labA 217 70.28 3cg4A 142 70.31 3b9qA 302 70.53 3fkrA 309 71.10 2gar 212 72.58 2c4nA 250 73.92 c.108.1.14 129837 3jr2A 218 73.94 3kefA 326 75.10 3cg0A 140 75.24 1qnf 484 75.28 2v82A 212 75.56 1a9xB 379 75.56 c.8.3.1,c.23.16.1 30732,31409 3h5dA 311 77.27 1i7qB 193 77.93 c.23.16.1 61902 3fkkA 309 79.63 3gwgA 129 80.51 1sur 215 80.63 2rfgA 297 83.20 2wq7A 543 83.86 3cprA 304 84.21 2fb2A 340 84.64 1zin 217 84.78 2mnr 357 85.41 1cs0A 1073 85.47 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 3l4yA 875 86.45 1srrA 124 88.48 c.23.1.1 31110 1xuuA 349 88.97 b.85.1.1,c.1.10.6 116067,116068