# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i45A 387 3.61e-29 3i09A 375 2.05e-28 1usgA 346 3.65e-28 c.93.1.1 99864 3hutA 358 4.58e-28 1peaA 385 5.84e-28 c.93.1.1 35662 1pea 385 9.64e-28 2liv 344 2.20e-27 1z15A 344 5.94e-27 3lkbA 392 6.60e-27 3h5lA 419 7.40e-27 3lopA 364 2.31e-26 3eafA 391 2.74e-25 3lmkA 492 3.33e-18 3ks9A 496 6.96e-18 1ewkA 490 3.39e-15 c.93.1.1 35712 1dp4A 435 1.43e-13 c.93.1.1 35710 1jdpA 441 6.63e-13 c.93.1.1 62906 2e4uA 555 7.33e-13 3h6gA 395 2.91e-12 3h5vA 394 4.59e-12 2wjwA 388 2.52e-11 3ckmA 327 2.15e-10 c.93.1.1 156739 3jpwA 363 2.04e-09 2rjoA 332 0.000700 3gbvA 304 0.001018 3l49A 291 0.001024 3ksmA 276 0.001264 2h3hA 313 0.001863 3g1wA 305 0.002257 1jx6A 342 0.002374 c.93.1.1 67406 3d02A 303 0.002578 1tjyA 316 0.002769 c.93.1.1 107062 3brsA 289 0.003223 3ejwA 315 0.004279 2qvcA 313 0.004280 3c6qA 311 0.005844 2dri 271 0.009579 1jftA 340 0.01347 a.35.1.5,c.93.1.1 66652,66653 1gca 309 0.01723 2driA 271 0.02416 c.93.1.1 35637 8abp 306 0.03260 3l6uA 293 0.03316 8abpA 306 0.03335 c.93.1.1 35647 1qpzA 340 0.03359 a.35.1.5,c.93.1.1 17097,35673 3lkvA 302 0.03392 3kjxA 344 0.03771 1dbqA 289 0.03900 c.93.1.1 35666 1vpwA 340 0.03951 a.35.1.5,c.93.1.1 17087,35680 2fvyA 309 0.04365 c.93.1.1 134227 1tlfA 301 0.04484 c.93.1.1 35687 1jyeA 349 0.05217 c.93.1.1 67455 3brqA 296 0.05871 2qh8A 302 0.06478 1efaA 333 0.07549 a.35.1.5,c.93.1.1 17106,35691 3g85A 289 0.08591 3egcA 291 0.08860 2vk2A 306 0.09020 3ctpA 330 0.1048 2fepA 289 0.1054 3e3mA 355 0.1108 2iksA 293 0.1245 2ioyA 283 0.1266 3h5oA 339 0.1268 3d8uA 275 0.1373 3k4hA 292 0.1507 3bilA 348 0.1512 2qu7A 288 0.1830 2rgyA 290 0.2383 3c3kA 285 0.2951 3gv0A 288 0.3065 2o20A 332 0.3177 3bblA 287 0.3317 1gudA 288 0.3413 c.93.1.1 83326 1bykA 255 0.3553 c.93.1.1 35706 3lftA 295 0.6444 3kkeA 303 0.6769 2fn9A 290 0.7736 3gybA 280 0.8015 3h75A 350 0.8027 3e61A 277 0.8373 3k9cA 289 0.8665 3jvdA 333 1.367 3cs3A 277 1.404 3huuA 305 1.959 3jy6A 276 2.059 3h5tA 366 2.135 3hcwA 295 2.387 3hs3A 277 2.809 1qkkA 155 3.411 c.23.1.1 31104 2q9uA 414 3.576 2dgdA 223 3.858 1k7yA 577 4.123 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 1bmtA 246 4.140 a.46.1.1,c.23.6.1 17757,31235 3dg9A 248 4.828 1u0sY 118 5.174 c.23.1.1 107566 3clkA 290 5.417 1o5kA 306 5.648 c.1.10.1 92504 1ab6A 125 6.561 c.23.1.1 31054 2qipA 165 6.733 1kgsA 225 6.933 a.4.6.1,c.23.1.1 68596,68597 1reqA 727 6.964 c.1.19.1,c.23.6.1 29620,31247 1xkyA 301 7.212 c.1.10.1 122094 1e5dA 402 8.166 c.23.5.1,d.157.1.3 31208,42061 2a6nA 292 8.209 c.1.10.1 126289 2a6lA 292 8.229 c.1.10.1 126285 2hqbA 296 8.420 1f74A 293 8.739 c.1.10.1 29079 2vlbA 251 9.559 1dhpA 292 9.560 c.1.10.1 29097 5reqA 727 10.03 c.1.19.1,c.23.6.1 29632,31259 2i2xB 258 11.16 1u8tA 129 11.53 c.23.1.1 113192 2fqxA 318 12.14 1wbhA 214 12.56 c.1.10.1 120845 3ixlA 240 12.62 1vhcA 224 13.02 c.1.10.1 100661 2yxbA 161 13.93 2vvpA 162 14.25 c.121.1.1 153645 2pjuA 225 14.42 c.92.3.1 149579 1c30B 382 14.53 c.8.3.1,c.23.16.1 30736,31413 3f4wA 211 14.86 3ixmA 240 15.39 1mejA 223 15.86 c.65.1.1 79029 1y81A 138 16.28 c.2.1.8 122731 2r25B 133 16.49 c.23.1.1 151530 1tmyA 120 16.50 c.23.1.1 31083 1ta9A 450 17.27 3dtvA 240 17.43 2q5cA 196 18.73 1uslA 170 18.94 c.121.1.1 99871 1l6wA 220 19.16 c.1.10.1 73632 2bdqA 224 19.39 1ab5A 125 19.48 c.23.1.1 31056 1jq5A 370 20.19 e.22.1.2 67084 1oxkB 134 20.89 c.23.1.1 93691 1l5zA 155 21.05 c.23.1.1 77722 3fluA 297 21.28 3fkrA 309 21.37 1meoA 209 22.05 c.65.1.1 79035 2h0aA 276 22.21 1a04A 215 22.29 a.4.6.2,c.23.1.1 16234,31089 1vmeA 410 23.19 c.23.5.1,d.157.1.3 108893,108894 3he8A 149 24.02 2gar 212 24.52 1fwrA 213 25.01 c.1.10.1 29164 2ehhA 294 25.21 3e96A 316 26.18 1w3iA 293 26.67 c.1.10.1 109152 3eulA 152 27.07 3h5dA 311 27.27 2qvgA 143 27.39 2rfgA 297 28.60 3fkkA 309 28.94 1jbeA 128 29.12 c.23.1.1 62845 3hebA 152 29.74 1jkxA 212 29.86 c.65.1.1 66813 3ce9A 354 30.13 2hmcA 344 31.98 2v9dA 343 32.58 1y80A 210 33.23 1a9xB 379 33.46 c.8.3.1,c.23.16.1 30732,31409 1j0aA 325 33.50 c.79.1.1 83871 3iv7A 364 34.18 2wkjA 303 34.50 1vljA 407 36.85 e.22.1.2 108832 1nal1 297 36.96 1cb0A 283 37.42 c.56.2.1 33790 2purA 292 37.46 3loqA 294 38.04 2hoqA 241 38.81 3lb0A 276 39.63 3bi8A 291 39.92 1c3oB 382 41.39 c.8.3.1,c.23.16.1 30744,31421 1v93A 296 42.56 c.1.23.1 100532 2vvrA 149 42.84 3cprA 304 43.28 3cg0A 140 43.83 1w25A 459 44.57 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2ojpA 292 45.20 3cfyA 137 45.38 1e6mA 128 46.29 c.23.1.1 31039 3lteA 132 47.55 1vimA 200 49.01 c.80.1.3 100758 1qf9A 194 49.05 c.37.1.1 31848 1yvuA 706 51.20 b.34.14.1,c.55.3.10 124120,124121 1zesA 125 51.61 c.23.1.1 124994 1fdyA 297 51.61 c.1.10.1 29071 3eb2A 300 51.65 3kzxA 231 53.71 3gwgA 129 53.98 1o2dA 371 54.55 e.22.1.2 86591 3a24A 641 56.22 3l4yA 875 58.02 1gqnA 252 59.38 c.1.10.1 90514 2qxyA 142 60.48 1iukA 140 60.62 c.2.1.8 83712 3daqA 292 61.01 1vlwA 217 61.30 c.1.10.1 108868 2qiwA 255 61.65 1wa3A 205 62.23 c.1.10.1 120802 1qfeA 252 63.25 c.1.10.1 29167 3m7wA 255 63.26 2i4iA 417 63.64 1yxyA 234 63.69 c.1.2.5 124203 3hl0A 353 64.10 2vc6A 292 64.12 1fyeA 229 64.72 c.23.16.4 31477 3i6iA 346 66.60 2zsjA 352 66.78 3lmzA 257 66.86 2r8wA 332 67.02 2atsA 292 67.03 c.1.10.1 127306 3k1aA 491 67.34 2d59A 144 67.46 c.2.1.8 131266 3cg4A 142 67.66 3gt7A 154 68.99 1z7yA 322 69.56 c.79.1.1 124679 1o1xA 155 69.89 c.121.1.1 86553 1uxoA 192 70.79 c.69.1.31 108121 1gpmA 525 71.02 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2plnA 137 71.03 3hltA 266 71.38 1w8sA 263 73.24 c.1.10.1 120744 3ciwA 348 73.85 3c3mA 138 74.31 1a53 247 74.52 1dz3A 130 74.92 c.23.1.1 31105 1s8nA 205 75.05 c.23.1.1 105374 3lppA 898 75.41 2r91A 286 75.43 1ccwA 137 75.53 c.23.6.1 31238 1xi3A 215 75.89 c.1.3.1 109601 2zayA 147 76.16 3f6cA 134 76.81 1tv8A 340 76.87 c.1.28.3 107352 1p9lA 245 77.88 c.2.1.3,d.81.1.3 94393,94394 1yl5A 247 78.00 c.2.1.3,d.81.1.3 123617,123618 3kbbA 216 78.75 1mdl 359 79.08 2d5cA 263 80.64 1xngA 268 80.74 c.26.2.1 122186 3hv2A 153 81.73 1mxsA 225 82.28 c.1.10.1 91494 1nf2A 268 83.17 c.108.1.10 91849 2blnA 305 83.89 b.46.1.1,c.65.1.1 128734,128735 2jbaA 127 85.21 3dlbA 685 85.74 2vuhB 139 85.96 2jk1A 139 86.87 1nvmA 345 87.33 a.5.7.1,c.1.10.5 86249,86250 2pibA 216 88.34 1vchA 175 88.63 c.61.1.1 119980 1vjrA 271 89.81 c.108.1.14 100832