# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i45A 387 2.69e-29 3i09A 375 1.50e-28 1usgA 346 3.05e-28 c.93.1.1 99864 1peaA 385 4.22e-28 c.93.1.1 35662 3hutA 358 4.23e-28 1pea 385 7.07e-28 2liv 344 2.30e-27 3h5lA 419 4.27e-27 3lkbA 392 5.04e-27 1z15A 344 5.64e-27 3lopA 364 2.04e-26 3eafA 391 1.98e-25 3lmkA 492 2.05e-18 3ks9A 496 3.84e-18 1ewkA 490 2.09e-15 c.93.1.1 35712 1dp4A 435 1.15e-13 c.93.1.1 35710 1jdpA 441 4.14e-13 c.93.1.1 62906 2e4uA 555 5.20e-13 3h6gA 395 2.11e-12 3h5vA 394 3.28e-12 2wjwA 388 1.94e-11 3ckmA 327 2.32e-10 c.93.1.1 156739 3jpwA 363 1.59e-09 2rjoA 332 0.000577 3ksmA 276 0.000690 3gbvA 304 0.000698 3l49A 291 0.000894 3d02A 303 0.001305 3g1wA 305 0.001476 2h3hA 313 0.001942 3ejwA 315 0.002220 3brsA 289 0.002325 1tjyA 316 0.002348 c.93.1.1 107062 1jx6A 342 0.002665 c.93.1.1 67406 2qvcA 313 0.004423 3c6qA 311 0.006207 2dri 271 0.008144 1jftA 340 0.01250 a.35.1.5,c.93.1.1 66652,66653 1gca 309 0.02089 2driA 271 0.02268 c.93.1.1 35637 8abp 306 0.02673 3kjxA 344 0.02999 8abpA 306 0.03073 c.93.1.1 35647 1dbqA 289 0.03258 c.93.1.1 35666 1qpzA 340 0.03474 a.35.1.5,c.93.1.1 17097,35673 1vpwA 340 0.03621 a.35.1.5,c.93.1.1 17087,35680 3lkvA 302 0.04046 2fvyA 309 0.04694 c.93.1.1 134227 3brqA 296 0.05011 3l6uA 293 0.05165 1jyeA 349 0.05278 c.93.1.1 67455 3g85A 289 0.05858 1tlfA 301 0.06088 c.93.1.1 35687 1efaA 333 0.07495 a.35.1.5,c.93.1.1 17106,35691 3egcA 291 0.08243 2vk2A 306 0.08531 2iksA 293 0.08616 2qh8A 302 0.08767 3d8uA 275 0.09544 3ctpA 330 0.09911 3e3mA 355 0.1009 2fepA 289 0.1026 2ioyA 283 0.1072 3h5oA 339 0.1089 3bilA 348 0.1597 2qu7A 288 0.1738 3k4hA 292 0.1773 2rgyA 290 0.1974 3c3kA 285 0.2456 3gv0A 288 0.2463 1bykA 255 0.3220 c.93.1.1 35706 2o20A 332 0.3442 3bblA 287 0.3544 1gudA 288 0.3827 c.93.1.1 83326 3gybA 280 0.5890 3h75A 350 0.6033 3k9cA 289 0.6597 3lftA 295 0.7160 3e61A 277 0.7626 3kkeA 303 0.8480 2fn9A 290 1.071 3cs3A 277 1.141 3jy6A 276 1.372 3jvdA 333 1.375 3h5tA 366 1.545 3huuA 305 1.854 1qkkA 155 2.543 c.23.1.1 31104 2dgdA 223 3.195 1o5kA 306 3.230 c.1.10.1 92504 1k7yA 577 3.379 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 2q9uA 414 3.634 3hs3A 277 3.686 1ab6A 125 3.694 c.23.1.1 31054 1bmtA 246 3.871 a.46.1.1,c.23.6.1 17757,31235 3hcwA 295 4.152 1f74A 293 4.210 c.1.10.1 29079 1u0sY 118 4.756 c.23.1.1 107566 1kgsA 225 5.159 a.4.6.1,c.23.1.1 68596,68597 2qipA 165 5.267 3dg9A 248 5.386 1reqA 727 5.635 c.1.19.1,c.23.6.1 29620,31247 1xkyA 301 6.087 c.1.10.1 122094 3clkA 290 6.320 1u8tA 129 8.037 c.23.1.1 113192 5reqA 727 8.111 c.1.19.1,c.23.6.1 29632,31259 2hqbA 296 8.560 2vlbA 251 9.096 1ab5A 125 9.397 c.23.1.1 31056 1e5dA 402 9.809 c.23.5.1,d.157.1.3 31208,42061 1wbhA 214 10.08 c.1.10.1 120845 1ta9A 450 10.08 2a6lA 292 10.33 c.1.10.1 126285 2a6nA 292 10.52 c.1.10.1 126289 2r25B 133 10.99 c.23.1.1 151530 2yxbA 161 11.20 1dhpA 292 11.78 c.1.10.1 29097 1tmyA 120 11.88 c.23.1.1 31083 2vvpA 162 12.33 c.121.1.1 153645 3ixlA 240 12.56 1jq5A 370 13.11 e.22.1.2 67084 1oxkB 134 13.21 c.23.1.1 93691 2i2xB 258 13.40 1vhcA 224 13.76 c.1.10.1 100661 1y81A 138 14.55 c.2.1.8 122731 1a04A 215 14.73 a.4.6.2,c.23.1.1 16234,31089 1mejA 223 15.09 c.65.1.1 79029 3ixmA 240 15.39 3f4wA 211 15.81 3fkrA 309 15.83 1uslA 170 16.00 c.121.1.1 99871 2h0aA 276 16.41 1c30B 382 16.41 c.8.3.1,c.23.16.1 30736,31413 2fqxA 318 16.52 3h5dA 311 17.24 2pjuA 225 17.47 c.92.3.1 149579 2ehhA 294 17.54 1jbeA 128 17.81 c.23.1.1 62845 2q5cA 196 18.12 1l5zA 155 18.87 c.23.1.1 77722 1l6wA 220 19.81 c.1.10.1 73632 3he8A 149 20.01 3fluA 297 20.52 1vmeA 410 21.00 c.23.5.1,d.157.1.3 108893,108894 2qvgA 143 21.13 1fwrA 213 22.00 c.1.10.1 29164 3eulA 152 22.16 1meoA 209 22.18 c.65.1.1 79035 3loqA 294 22.31 1y80A 210 23.09 3fkkA 309 24.34 1w3iA 293 24.81 c.1.10.1 109152 3dtvA 240 25.62 3ce9A 354 27.90 2bdqA 224 28.46 1nal1 297 29.20 3e96A 316 29.41 3bi8A 291 29.49 2v9dA 343 29.75 1a9xB 379 30.35 c.8.3.1,c.23.16.1 30732,31409 2wkjA 303 30.40 1s8nA 205 30.98 c.23.1.1 105374 1w25A 459 31.09 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2hmcA 344 31.74 2gar 212 33.15 1vljA 407 33.72 e.22.1.2 108832 2rfgA 297 33.85 3cg0A 140 34.39 1e6mA 128 34.92 c.23.1.1 31039 3cfyA 137 35.05 1dz3A 130 35.58 c.23.1.1 31105 1zesA 125 35.61 c.23.1.1 124994 1v93A 296 36.65 c.1.23.1 100532 1o2dA 371 36.80 e.22.1.2 86591 1jkxA 212 36.84 c.65.1.1 66813 2vvrA 149 37.12 2purA 292 37.25 1fdyA 297 37.46 c.1.10.1 29071 1c3oB 382 37.62 c.8.3.1,c.23.16.1 30744,31421 2hoqA 241 37.69 3lb0A 276 37.88 2qxyA 142 39.51 3cg4A 142 39.70 3f6cA 134 40.02 3cprA 304 40.23 3lteA 132 40.24 3iv7A 364 40.87 1qf9A 194 41.01 c.37.1.1 31848 3gt7A 154 42.60 3hebA 152 42.62 1mvoA 136 42.79 c.23.1.1 79513 1j0aA 325 44.32 c.79.1.1 83871 3c3mA 138 44.40 2plnA 137 48.99 1cb0A 283 50.22 c.56.2.1 33790 1rrmA 386 51.33 e.22.1.2 105081 2ojpA 292 51.73 2zsjA 352 52.58 3gwgA 129 53.16 1gqnA 252 53.35 c.1.10.1 90514 1uxoA 192 54.08 c.69.1.31 108121 1fyeA 229 57.02 c.23.16.4 31477 3m7wA 255 57.18 3eb2A 300 58.86 1yvuA 706 58.99 b.34.14.1,c.55.3.10 124120,124121 1xngA 268 59.06 c.26.2.1 122186 3a24A 641 59.49 1yxyA 234 59.76 c.1.2.5 124203 1vimA 200 60.01 c.80.1.3 100758 2jbaA 127 60.66 1wa3A 205 61.09 c.1.10.1 120802 1iukA 140 61.58 c.2.1.8 83712 3hl0A 353 63.32 3kzxA 231 63.68 2d59A 144 64.13 c.2.1.8 131266 2vc6A 292 64.71 3lmzA 257 65.40 1a53 247 66.08 1vlwA 217 66.45 c.1.10.1 108868 1mdl 359 66.46 2zayA 147 66.60 3dlbA 685 66.76 2jk1A 139 69.84 1xzoA 174 70.07 c.47.1.10 122474 2qiwA 255 70.14 3l4yA 875 70.49 3hv2A 153 70.60 1o1xA 155 71.54 c.121.1.1 86553 1mioB 458 71.69 c.92.2.3 35602 2qv0A 143 74.09 3ciwA 348 74.78 3lerA 301 76.57 3chy 128 76.94 3i6iA 346 77.19 2qzjA 136 77.74 1s3iA 310 78.05 b.46.1.1,c.65.1.1 98435,98436 1nf2A 268 78.18 c.108.1.10 91849 2ac7A 235 78.37 c.56.2.1 126543 3daqA 292 78.61 1z7yA 322 78.66 c.79.1.1 124679 2blnA 305 79.35 b.46.1.1,c.65.1.1 128734,128735 2f7fA 494 80.21 c.1.17.1,d.41.2.1 133088,133089 1b00A 127 80.90 c.23.1.1 31122 2vuhB 139 81.27 3jteA 143 81.66 1zin 217 81.98 2r8wA 332 82.65 1qfeA 252 82.93 c.1.10.1 29167 1euaA 213 83.06 c.1.10.1 29155 1gpmA 525 84.04 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1hl2A 297 84.43 c.1.10.1 83581 3kbbA 216 86.09 1yl5A 247 86.11 c.2.1.3,d.81.1.3 123617,123618 2pl1A 121 86.72 c.23.1.1 149610 1tv8A 340 86.87 c.1.28.3 107352 2rjnA 154 86.97 2pk3A 321 87.59 3hltA 266 87.91 1vchA 175 89.73 c.61.1.1 119980 2r91A 286 89.75 1mxsA 225 89.81 c.1.10.1 91494