# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i45A 387 1.98e-11 3i09A 375 2.21e-11 1usgA 346 3.97e-11 c.93.1.1 99864 1peaA 385 5.05e-11 c.93.1.1 35662 3hutA 358 5.71e-11 2liv 344 5.87e-11 1pea 385 6.70e-11 3lkbA 392 1.05e-10 1z15A 344 1.19e-10 3h5lA 419 1.62e-10 3lopA 364 2.84e-10 3eafA 391 4.85e-10 3lmkA 492 1.24e-07 3ks9A 496 2.43e-07 1ewkA 490 2.14e-06 c.93.1.1 35712 2e4uA 555 1.29e-05 1dp4A 435 2.15e-05 c.93.1.1 35710 1jdpA 441 2.23e-05 c.93.1.1 62906 3h6gA 395 3.35e-05 3h5vA 394 7.74e-05 2wjwA 388 0.000192 3ckmA 327 0.000608 c.93.1.1 156739 3jpwA 363 0.001065 3l49A 291 0.1103 2rjoA 332 0.1585 3brsA 289 0.2344 3gbvA 304 0.3161 3ksmA 276 0.3465 1jx6A 342 0.3526 c.93.1.1 67406 3g1wA 305 0.3688 2qvcA 313 0.4080 3c6qA 311 0.4362 2h3hA 313 0.4426 3d02A 303 0.6101 8abp 306 0.6374 1tjyA 316 0.6449 c.93.1.1 107062 2vk2A 306 0.7941 3l6uA 293 0.8753 3ejwA 315 0.9107 2dri 271 0.9129 8abpA 306 0.9388 c.93.1.1 35647 2driA 271 1.036 c.93.1.1 35637 1gudA 288 1.133 c.93.1.1 83326 1gca 309 1.300 2fn9A 290 1.555 2ioyA 283 1.605 1jyeA 349 1.991 c.93.1.1 67455 1efaA 333 2.067 a.35.1.5,c.93.1.1 17106,35691 3e3mA 355 2.106 1jftA 340 2.240 a.35.1.5,c.93.1.1 66652,66653 1dbqA 289 2.635 c.93.1.1 35666 3ctpA 330 2.855 2fvyA 309 2.870 c.93.1.1 134227 3brqA 296 3.012 3h75A 350 3.073 1tlfA 301 3.433 c.93.1.1 35687 1vpwA 340 3.502 a.35.1.5,c.93.1.1 17087,35680 3bilA 348 3.519 3gv0A 288 3.550 3h5oA 339 3.757 1qpzA 340 3.764 a.35.1.5,c.93.1.1 17097,35673 3kjxA 344 3.791 3bblA 287 4.018 3lkvA 302 4.178 2qu7A 288 4.569 3g85A 289 4.656 2rgyA 290 4.760 3c3kA 285 4.843 2o20A 332 5.081 2qh8A 302 5.192 3egcA 291 5.230 3k4hA 292 5.503 2fepA 289 5.647 2iksA 293 6.729 3gybA 280 7.436 1xkyA 301 7.759 c.1.10.1 122094 3d8uA 275 8.805 2a6nA 292 9.833 c.1.10.1 126289 2nuwA 288 10.25 2a6lA 292 10.27 c.1.10.1 126285 3hs3A 277 10.68 3huuA 305 10.93 3kkeA 303 11.31 3jvdA 333 11.41 3k9cA 289 11.66 3e61A 277 14.53 1bykA 255 14.84 c.93.1.1 35706 2rfgA 297 15.29 2r8wA 332 16.17 3hcwA 295 18.22 2atsA 292 19.18 c.1.10.1 127306 3lftA 295 20.48 1ta9A 450 21.48 2ojpA 292 22.23 3eb2A 300 24.33 3cprA 304 25.43 1o5kA 306 25.89 c.1.10.1 92504 3jy6A 276 27.20 3h5tA 366 27.45 3cs3A 277 27.45 1dhpA 292 29.50 c.1.10.1 29097 1a9xB 379 30.45 c.8.3.1,c.23.16.1 30732,31409 2hqbA 296 33.41 2q9uA 414 34.78 3dz1A 313 37.97 2h0aA 276 39.26 1f74A 293 39.64 c.1.10.1 29079 1hl2A 297 40.96 c.1.10.1 83581 2wkjA 303 41.38 3dg9A 248 44.28 1bmtA 246 46.95 a.46.1.1,c.23.6.1 17757,31235 3h5dA 311 47.08 3clkA 290 47.49 1tb3A 352 49.40 c.1.4.1 119205 2vvpA 162 51.05 c.121.1.1 153645 1u0sY 118 53.93 c.23.1.1 107566 2vlbA 251 55.40 1vmeA 410 55.50 c.23.5.1,d.157.1.3 108893,108894 2dgdA 223 56.21 1fdyA 297 56.58 c.1.10.1 29071 2purA 292 56.69 1w8sA 263 58.67 c.1.10.1 120744 2q5cA 196 59.22 1jq5A 370 59.64 e.22.1.2 67084 1xhcA 367 59.83 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1ir6A 424 61.60 c.107.1.2 71342 1j0aA 325 66.08 c.79.1.1 83871 1ab6A 125 67.26 c.23.1.1 31054 1ys4A 354 67.82 3k1aA 491 68.97 1qkkA 155 69.58 c.23.1.1 31104 1geqA 248 69.92 c.1.2.4 28589 2qipA 165 71.70 1uslA 170 72.01 c.121.1.1 99871 3fluA 297 72.24 1ab5A 125 72.59 c.23.1.1 31056 2yxbA 161 72.87 2hoqA 241 74.71 2ixdA 242 75.73 3daqA 292 76.27 3fkrA 309 76.65 1nal1 297 76.77 1y80A 210 76.88 1tmyA 120 77.60 c.23.1.1 31083 2qvgA 143 80.15 2v9dA 343 81.94 1yl5A 247 85.45 c.2.1.3,d.81.1.3 123617,123618 3mc1A 226 86.35 3ixlA 240 86.39 1fyeA 229 86.90 c.23.16.4 31477 1mejA 223 87.43 c.65.1.1 79029 3fkkA 309 87.76 3ixmA 240 88.24 1tv8A 340 88.99 c.1.28.3 107352 3bi8A 291 89.28 1qh8A 478 89.55 c.92.2.3 35633 1y81A 138 89.90 c.2.1.8 122731