# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i45A 387 1.19e-31 3i09A 375 8.17e-31 1peaA 385 1.97e-30 c.93.1.1 35662 1usgA 346 3.63e-30 c.93.1.1 99864 3hutA 358 4.34e-30 1pea 385 6.42e-30 2liv 344 1.63e-29 3h5lA 419 1.67e-29 1z15A 344 1.04e-28 3lkbA 392 1.10e-28 3lopA 364 2.38e-28 3eafA 391 3.85e-27 3lmkA 492 3.02e-19 3ks9A 496 3.98e-19 1ewkA 490 7.72e-16 c.93.1.1 35712 1dp4A 435 3.78e-14 c.93.1.1 35710 2e4uA 555 1.39e-13 1jdpA 441 1.56e-13 c.93.1.1 62906 3h6gA 395 1.20e-12 3h5vA 394 2.60e-12 2wjwA 388 1.29e-11 3ckmA 327 4.50e-11 c.93.1.1 156739 3jpwA 363 5.36e-10 1jx6A 342 0.000519 c.93.1.1 67406 3l49A 291 0.000866 2rjoA 332 0.001152 3brsA 289 0.001982 3gbvA 304 0.002315 2h3hA 313 0.002707 1tjyA 316 0.003216 c.93.1.1 107062 2qvcA 313 0.004394 3c6qA 311 0.004459 3d02A 303 0.004737 3g1wA 305 0.005094 3ksmA 276 0.008088 3ejwA 315 0.01472 3l6uA 293 0.02062 2dri 271 0.02896 1gca 309 0.03299 8abp 306 0.03564 1jftA 340 0.03662 a.35.1.5,c.93.1.1 66652,66653 2vk2A 306 0.04194 1jyeA 349 0.04421 c.93.1.1 67455 3lkvA 302 0.04966 1tlfA 301 0.05473 c.93.1.1 35687 2driA 271 0.05616 c.93.1.1 35637 1dbqA 289 0.07132 c.93.1.1 35666 8abpA 306 0.07659 c.93.1.1 35647 2fvyA 309 0.08051 c.93.1.1 134227 3kjxA 344 0.08994 3e3mA 355 0.1008 1efaA 333 0.1057 a.35.1.5,c.93.1.1 17106,35691 1qpzA 340 0.1086 a.35.1.5,c.93.1.1 17097,35673 2qh8A 302 0.1229 1vpwA 340 0.1358 a.35.1.5,c.93.1.1 17087,35680 3g85A 289 0.1401 2qu7A 288 0.1463 2iksA 293 0.1518 3brqA 296 0.1613 2ioyA 283 0.1649 3h5oA 339 0.1989 3c3kA 285 0.2441 3bilA 348 0.2452 3d8uA 275 0.2676 2fepA 289 0.2717 3ctpA 330 0.2808 2o20A 332 0.2896 1gudA 288 0.3175 c.93.1.1 83326 3egcA 291 0.3265 3gv0A 288 0.4689 2fn9A 290 0.4769 3bblA 287 0.5635 2rgyA 290 0.5746 3lftA 295 0.6646 3h75A 350 0.6821 3jvdA 333 0.7156 3jy6A 276 0.7292 1bykA 255 0.8131 c.93.1.1 35706 3k4hA 292 1.029 3cs3A 277 1.125 3e61A 277 1.592 3k9cA 289 1.728 3huuA 305 1.739 3kkeA 303 2.867 3hs3A 277 3.001 3gybA 280 3.003 2dgdA 223 3.721 3h5tA 366 4.313 1o5kA 306 4.443 c.1.10.1 92504 1xkyA 301 4.680 c.1.10.1 122094 3clkA 290 5.530 3hcwA 295 6.861 1j0aA 325 7.923 c.79.1.1 83871 1wbhA 214 8.049 c.1.10.1 120845 1k7yA 577 8.151 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 2a6nA 292 8.409 c.1.10.1 126289 2hqbA 296 9.095 2a6lA 292 10.45 c.1.10.1 126285 1c30B 382 10.47 c.8.3.1,c.23.16.1 30736,31413 2q9uA 414 11.28 1fwrA 213 13.48 c.1.10.1 29164 2vlbA 251 13.88 1vhcA 224 15.04 c.1.10.1 100661 3dtvA 240 15.14 3dg9A 248 16.27 1bmtA 246 16.31 a.46.1.1,c.23.6.1 17757,31235 1dhpA 292 16.46 c.1.10.1 29097 2rfgA 297 17.51 2qvgA 143 17.85 2qipA 165 18.74 5reqA 727 18.80 c.1.19.1,c.23.6.1 29632,31259 1reqA 727 19.84 c.1.19.1,c.23.6.1 29620,31247 2nuwA 288 19.96 3ixmA 240 20.67 2q5cA 196 21.96 1cb0A 283 22.44 c.56.2.1 33790 3h5dA 311 22.93 2vvpA 162 23.45 c.121.1.1 153645 1f74A 293 23.64 c.1.10.1 29079 3ixlA 240 24.11 1iukA 140 25.04 c.2.1.8 83712 2i2xB 258 25.17 3f4wA 211 26.57 3cprA 304 26.84 1fyeA 229 27.03 c.23.16.4 31477 3fluA 297 27.92 2fqxA 318 28.26 1y81A 138 28.91 c.2.1.8 122731 1uslA 170 30.31 c.121.1.1 99871 1qkkA 155 30.80 c.23.1.1 31104 2pjuA 225 32.51 c.92.3.1 149579 1u0sY 118 33.08 c.23.1.1 107566 3fkrA 309 33.15 3eb2A 300 33.21 2atsA 292 39.92 c.1.10.1 127306 1z7yA 322 40.96 c.79.1.1 124679 1mejA 223 40.97 c.65.1.1 79029 2r91A 286 41.17 2c4nA 250 41.80 c.108.1.14 129837 3ce9A 354 42.41 2wkjA 303 42.70 2v9dA 343 42.94 1nal1 297 43.05 1a9xB 379 43.35 c.8.3.1,c.23.16.1 30732,31409 1w3iA 293 44.40 c.1.10.1 109152 3fkkA 309 44.75 1ta9A 450 44.82 1ys4A 354 45.42 1jq5A 370 46.33 e.22.1.2 67084 2r8wA 332 47.75 3daqA 292 48.10 1l6wA 220 49.27 c.1.10.1 73632 2vvrA 149 50.00 1p9lA 245 50.02 c.2.1.3,d.81.1.3 94393,94394 1c3oB 382 50.51 c.8.3.1,c.23.16.1 30744,31421 3he8A 149 50.71 1yl5A 247 51.14 c.2.1.3,d.81.1.3 123617,123618 2h0aA 276 51.61 1y80A 210 51.92 2hmcA 344 52.94 2purA 292 53.19 1yxyA 234 53.33 c.1.2.5 124203 1iugA 352 53.34 c.67.1.3 90699 2ojpA 292 54.61 1kq3A 376 55.64 e.22.1.2 68790 3bzbA 281 57.65 1v93A 296 60.25 c.1.23.1 100532 3e96A 316 60.67 1wab 232 62.34 1meoA 209 62.78 c.65.1.1 79035 2bdqA 224 66.13 3bi8A 291 66.27 2pqmA 343 71.47 2d59A 144 71.49 c.2.1.8 131266 1o1xA 155 71.98 c.121.1.1 86553 1ab6A 125 72.18 c.23.1.1 31054 2egzA 219 73.19 1hl2A 297 74.08 c.1.10.1 83581 3iv7A 364 75.50 1vizA 240 77.53 c.1.4.1 100784 1euaA 213 77.94 c.1.10.1 29155 1mxsA 225 79.28 c.1.10.1 91494 2ho4A 259 80.03 1sur 215 81.83 2ixdA 242 83.71 3hltA 266 84.89 1vchA 175 86.90 c.61.1.1 119980 1ab5A 125 88.31 c.23.1.1 31056 2gar 212 88.57 3hebA 152 89.66