# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i45A 387 2.93e-32 3i09A 375 1.89e-31 1peaA 385 4.81e-31 c.93.1.1 35662 3hutA 358 7.66e-31 1usgA 346 8.57e-31 c.93.1.1 99864 1pea 385 9.27e-31 2liv 344 3.58e-30 3h5lA 419 5.15e-30 1z15A 344 1.54e-29 3lkbA 392 2.44e-29 3lopA 364 5.38e-29 3eafA 391 1.13e-27 3lmkA 492 4.03e-20 3ks9A 496 2.00e-19 1ewkA 490 2.05e-16 c.93.1.1 35712 1dp4A 435 6.57e-15 c.93.1.1 35710 2e4uA 555 4.40e-14 1jdpA 441 4.65e-14 c.93.1.1 62906 3h6gA 395 2.69e-13 3h5vA 394 7.27e-13 2wjwA 388 3.99e-12 3ckmA 327 3.57e-11 c.93.1.1 156739 3jpwA 363 1.66e-10 1jx6A 342 0.000374 c.93.1.1 67406 2rjoA 332 0.000431 3l49A 291 0.000454 3gbvA 304 0.000562 3brsA 289 0.000978 2h3hA 313 0.000990 1tjyA 316 0.001598 c.93.1.1 107062 3c6qA 311 0.001694 3ksmA 276 0.001769 3g1wA 305 0.001836 2qvcA 313 0.002113 3ejwA 315 0.002233 3d02A 303 0.002615 2dri 271 0.009741 8abp 306 0.01295 1gca 309 0.01343 3l6uA 293 0.01436 2vk2A 306 0.01859 1jftA 340 0.02068 a.35.1.5,c.93.1.1 66652,66653 2driA 271 0.02252 c.93.1.1 35637 1jyeA 349 0.02335 c.93.1.1 67455 8abpA 306 0.02718 c.93.1.1 35647 1tlfA 301 0.03322 c.93.1.1 35687 3lkvA 302 0.04297 2fvyA 309 0.04310 c.93.1.1 134227 1dbqA 289 0.04889 c.93.1.1 35666 1efaA 333 0.04952 a.35.1.5,c.93.1.1 17106,35691 3kjxA 344 0.05007 3brqA 296 0.05825 1qpzA 340 0.07445 a.35.1.5,c.93.1.1 17097,35673 2iksA 293 0.08621 1vpwA 340 0.08939 a.35.1.5,c.93.1.1 17087,35680 3h5oA 339 0.09145 2qu7A 288 0.09721 2qh8A 302 0.1036 3e3mA 355 0.1123 3ctpA 330 0.1126 1gudA 288 0.1131 c.93.1.1 83326 3bilA 348 0.1188 2ioyA 283 0.1213 3g85A 289 0.1330 3d8uA 275 0.1510 2fepA 289 0.1732 2o20A 332 0.2042 3egcA 291 0.2352 3c3kA 285 0.2503 3gv0A 288 0.2728 2rgyA 290 0.3078 3k4hA 292 0.3185 3bblA 287 0.3361 2fn9A 290 0.4382 3jvdA 333 0.4620 3lftA 295 0.5116 1bykA 255 0.6668 c.93.1.1 35706 3cs3A 277 0.7195 3kkeA 303 0.8218 3h75A 350 0.8663 3jy6A 276 1.175 3k9cA 289 1.271 3e61A 277 1.398 3huuA 305 1.613 3gybA 280 2.280 3hcwA 295 2.309 3h5tA 366 2.352 3hs3A 277 2.853 2q9uA 414 3.002 2dgdA 223 3.497 1k7yA 577 4.575 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 1xkyA 301 5.019 c.1.10.1 122094 3clkA 290 5.569 1o5kA 306 5.592 c.1.10.1 92504 2hqbA 296 6.092 2qipA 165 6.099 3dg9A 248 6.911 1reqA 727 7.104 c.1.19.1,c.23.6.1 29620,31247 1wbhA 214 7.421 c.1.10.1 120845 5reqA 727 7.846 c.1.19.1,c.23.6.1 29632,31259 2vlbA 251 7.950 1dhpA 292 8.674 c.1.10.1 29097 1j0aA 325 8.815 c.79.1.1 83871 1bmtA 246 8.863 a.46.1.1,c.23.6.1 17757,31235 2a6nA 292 11.15 c.1.10.1 126289 2a6lA 292 12.12 c.1.10.1 126285 1c30B 382 12.88 c.8.3.1,c.23.16.1 30736,31413 1vhcA 224 12.99 c.1.10.1 100661 1u0sY 118 13.79 c.23.1.1 107566 2i2xB 258 13.93 3ixmA 240 14.14 3dtvA 240 14.30 1mejA 223 14.42 c.65.1.1 79029 1qkkA 155 14.63 c.23.1.1 31104 2vvpA 162 15.91 c.121.1.1 153645 2qvgA 143 16.33 1y81A 138 16.74 c.2.1.8 122731 3f4wA 211 16.99 3ixlA 240 17.19 1fyeA 229 17.68 c.23.16.4 31477 1ab6A 125 19.59 c.23.1.1 31054 1fwrA 213 19.70 c.1.10.1 29164 1uslA 170 20.40 c.121.1.1 99871 1f74A 293 20.87 c.1.10.1 29079 2q5cA 196 21.54 2fqxA 318 21.86 2h0aA 276 22.22 3ce9A 354 23.19 1kgsA 225 23.70 a.4.6.1,c.23.1.1 68596,68597 1ta9A 450 24.43 1u8tA 129 24.43 c.23.1.1 113192 3he8A 149 25.09 1dc7A 124 25.96 c.23.1.1 31093 1meoA 209 26.90 c.65.1.1 79035 3h5dA 311 28.07 1iukA 140 29.34 c.2.1.8 83712 2gar 212 30.25 1vmeA 410 32.56 c.23.5.1,d.157.1.3 108893,108894 2pjuA 225 34.04 c.92.3.1 149579 3fluA 297 34.27 1cb0A 283 34.99 c.56.2.1 33790 1a9xB 379 35.80 c.8.3.1,c.23.16.1 30732,31409 1ab5A 125 35.81 c.23.1.1 31056 1l6wA 220 36.04 c.1.10.1 73632 3cprA 304 36.96 2vvrA 149 37.18 1nal1 297 37.20 2bdqA 224 38.31 1tdj 514 39.83 1jkxA 212 40.07 c.65.1.1 66813 1jq5A 370 40.59 e.22.1.2 67084 1vchA 175 42.25 c.61.1.1 119980 1z7yA 322 42.58 c.79.1.1 124679 1ir6A 424 42.60 c.107.1.2 71342 2rfgA 297 44.66 1vljA 407 44.78 e.22.1.2 108832 3l4yA 875 44.82 1tmyA 120 45.57 c.23.1.1 31083 2d59A 144 45.93 c.2.1.8 131266 1yxyA 234 46.20 c.1.2.5 124203 1c3oB 382 46.73 c.8.3.1,c.23.16.1 30744,31421 1rrmA 386 48.37 e.22.1.2 105081 1uxoA 192 48.57 c.69.1.31 108121 3hebA 152 49.21 1v93A 296 49.29 c.1.23.1 100532 2hoqA 241 50.39 2yxbA 161 51.27 2purA 292 52.51 1o2dA 371 54.54 e.22.1.2 86591 1y80A 210 54.64 1e5dA 402 55.01 c.23.5.1,d.157.1.3 31208,42061 3iv7A 364 56.42 1a04A 215 56.95 a.4.6.2,c.23.1.1 16234,31089 1o1xA 155 60.38 c.121.1.1 86553 3fkrA 309 60.92 1sur 215 61.70 1nf2A 268 61.74 c.108.1.10 91849 2r8wA 332 61.85 1oxkB 134 64.15 c.23.1.1 93691 1e6uA 321 64.95 c.2.1.2 29805 3eb2A 300 66.24 3lppA 898 66.42 1yvuA 706 68.02 b.34.14.1,c.55.3.10 124120,124121 2hmcA 344 69.09 3lteA 132 71.09 1w3iA 293 74.67 c.1.10.1 109152 2ojpA 292 75.87 1l5zA 155 76.29 c.23.1.1 77722 3daqA 292 76.41 2pqmA 343 76.44 1f4pA 147 77.19 c.23.5.1 59651 2wkjA 303 77.40 1mxsA 225 77.98 c.1.10.1 91494 3cfyA 137 78.00 2r00A 336 78.15 2atsA 292 78.71 c.1.10.1 127306 2zsjA 352 78.97 1w25A 459 79.05 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2v9dA 343 79.40 3fkkA 309 81.23 2we5A 310 81.42 1ccwA 137 81.58 c.23.6.1 31238 1qf9A 194 82.18 c.37.1.1 31848 1bu5A 147 82.75 c.23.5.1 31155 1i1qB 192 83.68 c.23.16.1 61544 1hl2A 297 84.07 c.1.10.1 83581 1swvA 267 84.13 c.108.1.3 112134 2c4nA 250 84.34 c.108.1.14 129837 2nvaA 372 84.45 1i7qB 193 84.85 c.23.16.1 61902 3m46A 666 86.56 1fdyA 297 86.97 c.1.10.1 29071 3a24A 641 87.20 1euaA 213 87.28 c.1.10.1 29155 1s3iA 310 88.14 b.46.1.1,c.65.1.1 98435,98436 3ho1A 685 88.47 1wl8A 189 89.57 c.23.16.1 120997 2r25B 133 89.99 c.23.1.1 151530