# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i45A 387 8.33e-25 3i09A 375 3.18e-24 3hutA 358 3.44e-24 1peaA 385 8.14e-24 c.93.1.1 35662 1pea 385 1.11e-23 1usgA 346 1.12e-23 c.93.1.1 99864 2liv 344 2.43e-23 3lkbA 392 3.34e-23 1z15A 344 3.53e-23 3lopA 364 5.93e-23 3h5lA 419 1.71e-22 3eafA 391 3.64e-21 3lmkA 492 1.34e-15 3ks9A 496 4.44e-15 1ewkA 490 8.72e-14 c.93.1.1 35712 1dp4A 435 1.50e-11 c.93.1.1 35710 2e4uA 555 5.06e-11 1jdpA 441 6.74e-11 c.93.1.1 62906 3h6gA 395 2.74e-10 3h5vA 394 4.85e-10 2wjwA 388 1.37e-09 3ckmA 327 7.53e-08 c.93.1.1 156739 3jpwA 363 1.36e-07 2h3hA 313 0.000325 3l49A 291 0.000386 3brsA 289 0.000546 1tjyA 316 0.000570 c.93.1.1 107062 3d02A 303 0.000852 2rjoA 332 0.000853 2qvcA 313 0.000935 3g1wA 305 0.001095 3gbvA 304 0.001234 3ksmA 276 0.001298 3c6qA 311 0.001353 3ejwA 315 0.001375 1jx6A 342 0.001795 c.93.1.1 67406 2vk2A 306 0.004699 2dri 271 0.006944 2ioyA 283 0.007234 3l6uA 293 0.008223 1gca 309 0.01343 8abp 306 0.01777 8abpA 306 0.01881 c.93.1.1 35647 1jyeA 349 0.02260 c.93.1.1 67455 2driA 271 0.02564 c.93.1.1 35637 1tlfA 301 0.02635 c.93.1.1 35687 1gudA 288 0.02641 c.93.1.1 83326 3kjxA 344 0.02894 2fvyA 309 0.03499 c.93.1.1 134227 3lkvA 302 0.03916 1efaA 333 0.04394 a.35.1.5,c.93.1.1 17106,35691 3h5oA 339 0.05376 1jftA 340 0.05450 a.35.1.5,c.93.1.1 66652,66653 3ctpA 330 0.08109 2qh8A 302 0.08188 3egcA 291 0.08259 2fn9A 290 0.09187 3c3kA 285 0.09786 1qpzA 340 0.09838 a.35.1.5,c.93.1.1 17097,35673 3brqA 296 0.1003 2rgyA 290 0.1023 1vpwA 340 0.1025 a.35.1.5,c.93.1.1 17087,35680 3bilA 348 0.1142 2qu7A 288 0.1190 2o20A 332 0.1230 3lftA 295 0.1281 3d8uA 275 0.1566 2fepA 289 0.1717 3k4hA 292 0.1788 3e3mA 355 0.1800 3g85A 289 0.1854 3gv0A 288 0.1861 3bblA 287 0.2096 3gybA 280 0.2197 3jy6A 276 0.2296 3hcwA 295 0.2445 1bykA 255 0.3154 c.93.1.1 35706 3h75A 350 0.3158 2iksA 293 0.3237 1dbqA 289 0.4864 c.93.1.1 35666 3cs3A 277 0.5605 3k9cA 289 0.6307 3huuA 305 0.8746 3jvdA 333 0.9743 3e61A 277 2.013 3hs3A 277 2.255 3kkeA 303 2.274 2dgdA 223 2.737 3h5tA 366 2.807 3ixmA 240 3.309 3ixlA 240 3.431 2vlbA 251 4.216 3clkA 290 4.612 2fqxA 318 4.871 1zuwA 272 6.585 2ehhA 294 6.843 2a6lA 292 7.459 c.1.10.1 126285 3dtvA 240 7.713 1o5kA 306 7.857 c.1.10.1 92504 2a6nA 292 8.261 c.1.10.1 126289 2rfgA 297 8.606 3e96A 316 9.215 2r91A 286 9.309 3dg9A 248 9.434 1xkyA 301 10.50 c.1.10.1 122094 1dhpA 292 10.65 c.1.10.1 29097 2vc6A 292 12.45 3fluA 297 12.98 2nuwA 288 13.56 1uxoA 192 14.57 c.69.1.31 108121 2v9dA 343 14.77 1f74A 293 15.24 c.1.10.1 29079 2z1dA 372 16.40 3bi8A 291 16.49 2jfuA 291 16.58 2w00A 1038 18.60 3f4wA 211 18.69 1w3iA 293 18.77 c.1.10.1 109152 2gzmA 267 20.53 2h0aA 276 21.29 3eb2A 300 21.69 1nal1 297 22.09 2eq5A 228 22.64 2atsA 292 23.01 c.1.10.1 127306 3daqA 292 23.47 3istA 269 24.17 1fyeA 229 24.74 c.23.16.4 31477 1ab6A 125 25.89 c.23.1.1 31054 1k7yA 577 26.75 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 3fkkA 309 29.35 3fkrA 309 29.50 1b74A 254 29.77 c.78.2.1,c.78.2.1 35264,35265 2purA 292 31.90 2wkjA 303 33.76 1qq9A 284 34.28 c.56.5.4 33841 1xjo 284 36.59 1ta9A 450 36.89 2vvpA 162 37.52 c.121.1.1 153645 3h5dA 311 39.23 1vljA 407 39.43 e.22.1.2 108832 2oycA 306 39.72 2hqbA 296 40.00 1u8tA 129 40.17 c.23.1.1 113192 2ojpA 292 41.56 2vvrA 149 41.88 3he8A 149 45.03 3cprA 304 45.38 1ab5A 125 49.54 c.23.1.1 31056 1lokA 291 51.39 c.56.5.4 78122 2vvtA 290 52.02 1c30B 382 53.06 c.8.3.1,c.23.16.1 30736,31413 2f48A 555 53.62 c.89.1.1 132915 3d0cA 314 53.94 1tkjA 284 55.75 c.56.5.4 119296 1i7qB 193 56.27 c.23.16.1 61902 3ce9A 354 56.64 1fdyA 297 56.87 c.1.10.1 29071 1u0sY 118 57.52 c.23.1.1 107566 1uslA 170 60.01 c.121.1.1 99871 3lhlA 287 60.09 1o1xA 155 61.18 c.121.1.1 86553 1bd3A 243 61.54 c.61.1.1 34098 2q3bA 313 64.90 1h1lA 481 66.61 c.92.2.3 70851 1hl2A 297 69.31 c.1.10.1 83581 2hx1A 284 74.61 2bonA 332 74.95 e.52.1.2 146163 3bzwA 274 74.97 c.23.10.9 155792 2pcqA 283 75.37 2hmcA 344 75.43 1i1qB 192 76.28 c.23.16.1 61544 1o5oA 221 78.60 c.61.1.1 92509 1l7mA 211 80.14 c.108.1.4 73664 2cftA 298 80.26 1j97A 211 82.30 c.108.1.4 62753 1j8yF 297 84.42 a.24.13.1,c.37.1.10 62747,62748 3en0A 291 88.33 1ys4A 354 89.98