# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i45A 387 1.38e-24 3i09A 375 6.22e-24 3hutA 358 2.04e-23 1usgA 346 3.21e-23 c.93.1.1 99864 1peaA 385 3.23e-23 c.93.1.1 35662 1pea 385 5.11e-23 2liv 344 6.28e-23 1z15A 344 1.44e-22 3lkbA 392 2.13e-22 3h5lA 419 2.71e-22 3lopA 364 5.88e-22 3eafA 391 1.34e-20 3lmkA 492 1.63e-15 3ks9A 496 7.89e-15 1ewkA 490 2.95e-13 c.93.1.1 35712 1dp4A 435 1.70e-11 c.93.1.1 35710 2e4uA 555 4.81e-11 1jdpA 441 5.97e-11 c.93.1.1 62906 3h6gA 395 6.37e-10 3h5vA 394 8.35e-09 2wjwA 388 1.20e-08 3ckmA 327 1.77e-08 c.93.1.1 156739 3jpwA 363 1.69e-07 3l49A 291 0.000678 3brsA 289 0.001441 1jx6A 342 0.001620 c.93.1.1 67406 2h3hA 313 0.002592 1tjyA 316 0.003206 c.93.1.1 107062 3gbvA 304 0.004163 2qvcA 313 0.004702 2rjoA 332 0.006558 3d02A 303 0.006857 3c6qA 311 0.007150 3g1wA 305 0.007345 3ksmA 276 0.007635 3ejwA 315 0.007995 3l6uA 293 0.01044 2dri 271 0.01722 2vk2A 306 0.02251 1gca 309 0.02328 1tlfA 301 0.02407 c.93.1.1 35687 2driA 271 0.02412 c.93.1.1 35637 2fvyA 309 0.02632 c.93.1.1 134227 1jyeA 349 0.02761 c.93.1.1 67455 2ioyA 283 0.03022 8abpA 306 0.05224 c.93.1.1 35647 3ctpA 330 0.05466 8abp 306 0.06979 3kjxA 344 0.07851 3lkvA 302 0.08031 1jftA 340 0.08907 a.35.1.5,c.93.1.1 66652,66653 3brqA 296 0.09195 1efaA 333 0.09427 a.35.1.5,c.93.1.1 17106,35691 1gudA 288 0.09865 c.93.1.1 83326 3h5oA 339 0.1226 2qh8A 302 0.1357 2fepA 289 0.1376 3c3kA 285 0.1424 3g85A 289 0.1434 2o20A 332 0.1503 3egcA 291 0.1551 3bilA 348 0.1587 2fn9A 290 0.1673 3e3mA 355 0.1848 1dbqA 289 0.2022 c.93.1.1 35666 2qu7A 288 0.2209 1qpzA 340 0.2232 a.35.1.5,c.93.1.1 17097,35673 3jy6A 276 0.2503 1vpwA 340 0.2888 a.35.1.5,c.93.1.1 17087,35680 1bykA 255 0.3006 c.93.1.1 35706 3d8uA 275 0.3356 3gybA 280 0.3650 3lftA 295 0.3951 2iksA 293 0.4068 2rgyA 290 0.4267 3k9cA 289 0.4403 3k4hA 292 0.4762 3gv0A 288 0.5927 3cs3A 277 0.6641 3bblA 287 0.7909 3hcwA 295 1.073 3hs3A 277 1.080 3jvdA 333 1.209 3h75A 350 1.480 3kkeA 303 1.489 3e61A 277 1.803 3huuA 305 1.939 3dtvA 240 2.532 2r91A 286 2.607 3dg9A 248 3.042 3ixlA 240 4.004 3h5tA 366 4.151 3ixmA 240 4.502 3clkA 290 4.592 2rfgA 297 4.676 1o5kA 306 5.542 c.1.10.1 92504 3fkkA 309 5.586 2nuwA 288 5.807 3fkrA 309 6.775 1xkyA 301 6.925 c.1.10.1 122094 2ehhA 294 7.975 3eb2A 300 8.156 2hqbA 296 8.578 2dgdA 223 8.597 2vc6A 292 9.167 2fqxA 318 9.331 2vlbA 251 10.91 1vhcA 224 11.21 c.1.10.1 100661 1dhpA 292 11.90 c.1.10.1 29097 3dz1A 313 12.12 3e96A 316 12.75 1zuwA 272 12.97 1bmtA 246 13.30 a.46.1.1,c.23.6.1 17757,31235 3h5dA 311 13.53 2a6lA 292 15.19 c.1.10.1 126285 3bi8A 291 15.62 1f74A 293 15.74 c.1.10.1 29079 3daqA 292 15.96 3ce9A 354 16.29 2wkjA 303 16.40 2atsA 292 16.89 c.1.10.1 127306 2jfuA 291 16.96 3bzwA 274 17.06 c.23.10.9 155792 1k7yA 577 17.37 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 2a6nA 292 17.39 c.1.10.1 126289 2w00A 1038 19.02 1nal1 297 19.30 2pjuA 225 20.31 c.92.3.1 149579 3fluA 297 20.52 1ccwA 137 21.39 c.23.6.1 31238 2a0mA 316 22.96 c.42.1.1 125960 3cprA 304 23.94 3lerA 301 24.44 5reqA 727 25.25 c.1.19.1,c.23.6.1 29632,31259 1fyeA 229 25.71 c.23.16.4 31477 1wbhA 214 27.87 c.1.10.1 120845 2h0aA 276 28.03 2yxbA 161 28.59 2vvpA 162 28.79 c.121.1.1 153645 1i1qB 192 29.32 c.23.16.1 61544 1reqA 727 30.54 c.1.19.1,c.23.6.1 29620,31247 2r8wA 332 30.60 3istA 269 31.06 2eq5A 228 31.11 3he8A 149 31.26 2wjyA 800 31.87 2ojpA 292 32.04 2i2xB 258 32.63 1c30B 382 33.14 c.8.3.1,c.23.16.1 30736,31413 1uslA 170 33.96 c.121.1.1 99871 1ab6A 125 34.20 c.23.1.1 31054 1fdyA 297 34.35 c.1.10.1 29071 1i7qB 193 34.45 c.23.16.1 61902 1ab5A 125 34.55 c.23.1.1 31056 3d0cA 314 35.08 1fwrA 213 35.11 c.1.10.1 29164 2qvgA 143 35.21 2qipA 165 36.07 1vljA 407 36.55 e.22.1.2 108832 1gpmA 525 36.93 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 3kp1A 763 37.49 1uxoA 192 37.78 c.69.1.31 108121 2f7fA 494 38.88 c.1.17.1,d.41.2.1 133088,133089 1o2dA 371 39.96 e.22.1.2 86591 3gjzA 336 40.48 1o1xA 155 41.54 c.121.1.1 86553 1qkkA 155 42.31 c.23.1.1 31104 1u0sY 118 42.55 c.23.1.1 107566 3f4wA 211 42.71 2vvrA 149 43.49 1hl2A 297 43.72 c.1.10.1 83581 1cb0A 283 44.39 c.56.2.1 33790 1b74A 254 45.11 c.78.2.1,c.78.2.1 35264,35265 2aumA 317 47.78 c.8.10.1,c.23.16.7 127330,127331 1hslA 238 47.92 c.94.1.1 35804 2q5cA 196 48.17 1wl8A 189 48.67 c.23.16.1 120997 2purA 292 50.60 1a9xB 379 54.53 c.8.3.1,c.23.16.1 30732,31409 1scuA 288 56.40 c.2.1.8,c.23.4.1 30307,31135 1c3oB 382 56.82 c.8.3.1,c.23.16.1 30744,31421 2aunA 317 57.78 c.8.10.1,c.23.16.7 127334,127335 1vizA 240 58.59 c.1.4.1 100784 2gzmA 267 58.84 1qcwA 410 58.99 c.1.4.1 28622 1qdlB 195 60.80 c.23.16.1 31437 1wab 232 61.31 1y80A 210 62.14 1sbp 310 62.88 1u8tA 129 64.56 c.23.1.1 113192 1e6mA 128 67.15 c.23.1.1 31039 1w3iA 293 68.17 c.1.10.1 109152 1eudA 311 69.88 c.2.1.8,c.23.4.1 30312,31140 2hx1A 284 72.21 1zrsA 317 72.89 c.8.10.1,c.23.16.7 125556,125557 1gq6A 313 73.66 c.42.1.1 70341 2r00A 336 75.80 3dahA 319 75.81 1ta9A 450 75.92 1lokA 291 76.60 c.56.5.4 78122 1bu5A 147 78.35 c.23.5.1 31155 2v9dA 343 80.12 1tmyA 120 80.97 c.23.1.1 31083 3en0A 291 84.74 2pcqA 283 84.95 3lhlA 287 86.65 1j8yF 297 87.84 a.24.13.1,c.37.1.10 62747,62748