# List of top-scoring protein chains for T0528.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i09A 375 1.43e-19 2lbpA 346 5.75e-19 c.93.1.1 35709 1usgA 346 7.17e-19 c.93.1.1 99864 1ewkA 490 2.98e-18 c.93.1.1 35712 3ks9A 496 3.52e-18 3lmkA 492 6.46e-18 1z15A 344 6.54e-18 2livA 344 9.83e-18 c.93.1.1 35708 2e4zA 501 1.40e-17 3hutA 358 4.66e-17 3i45A 387 2.32e-16 2e4uA 555 4.04e-16 1qnlA 385 3.95e-14 c.93.1.1 35665 1peaA 385 4.15e-14 c.93.1.1 35662 3lopA 364 1.74e-13 3eafA 391 2.77e-12 3lkbA 392 3.67e-12 3h6gA 395 1.40e-11 2ioyA 283 3.20e-11 1yk0A 480 5.23e-11 1yk1A 479 5.23e-11 3h5lA 419 6.64e-11 1jdpA 441 1.08e-10 c.93.1.1 62906 2gx6A 278 1.45e-10 1dp4A 435 1.51e-10 c.93.1.1 35710 1dbpA 271 3.16e-10 c.93.1.1 35639 2driA 271 3.24e-10 c.93.1.1 35637 1drkA 271 3.78e-10 c.93.1.1 35638 1drjA 271 3.79e-10 c.93.1.1 35642 1ba2A 271 4.18e-10 c.93.1.1 35640 3h5vA 394 3.26e-09 2wjwA 388 4.12e-09 2vk2A 306 3.24e-08 3kg2A 823 6.39e-08 3lkvA 302 6.49e-06 2fn8A 303 7.15e-06 2fn9A 290 8.28e-06 3c6qA 311 1.04e-05 2h3hA 313 1.10e-05 1gudA 288 1.14e-05 c.93.1.1 83326 2qvcA 313 1.27e-05 3ksmA 276 7.08e-05 1tjyA 316 8.95e-05 c.93.1.1 107062 3l6uA 293 0.000103 3lftA 295 0.000104 3ejwA 315 0.000112 3ckmA 327 0.000219 c.93.1.1 156739 3gbpA 307 0.000309 c.93.1.1 35661 1gcaA 309 0.000313 c.93.1.1 35659 2ipmA 318 0.000356 2hphA 316 0.000377 c.93.1.1 136652 2fvyA 309 0.000393 c.93.1.1 134227 3h75A 350 0.000403 2ipnA 318 0.000520 3h5oA 339 0.000731 2iplA 318 0.001121 3e3mA 355 0.001194 2rjoA 332 0.001265 3jpwA 363 0.002065 3l49A 291 0.002165 3clkA 290 0.005256 2jcgA 332 0.009545 1jftA 340 0.009669 a.35.1.5,c.93.1.1 66652,66653 3brqA 296 0.009680 1jh9A 340 0.01066 a.35.1.5,c.93.1.1 66710,66711 3dbiA 338 0.01114 2pucA 340 0.01183 a.35.1.5,c.93.1.1 17094,35684 2pugA 340 0.01197 a.35.1.5,c.93.1.1 17088,35683 3ctpA 330 0.01274 2nzuG 280 0.01488 c.93.1.1 138854 1qpzA 340 0.01494 a.35.1.5,c.93.1.1 17097,35673 1vpwA 340 0.01506 a.35.1.5,c.93.1.1 17087,35680 1jfsA 340 0.01520 a.35.1.5,c.93.1.1 66650,66651 1qqbA 340 0.01532 a.35.1.5,c.93.1.1 17099,35674 3bilA 348 0.01669 2fepA 289 0.01673 2hsgA 332 0.01845 a.35.1.5,c.93.1.1 136722,136723 3kjxA 344 0.01950 1dbqA 289 0.02065 c.93.1.1 35666 1jhzA 289 0.02082 c.93.1.1 66731 3c3kA 285 0.02146 2hj9A 339 0.03048 c.93.1.1 136538 1jx6A 342 0.03106 c.93.1.1 67406 1zhhA 344 0.03147 c.93.1.1 125095 3brsA 289 0.03461 3hs3A 277 0.04550 3d02A 303 0.05267 3g1wA 305 0.06776 2o20A 332 0.09351 3k4hA 292 0.1512 3huuA 305 0.1516 3bblA 287 0.1694 1tlfA 301 0.1817 c.93.1.1 35687 3gbvA 304 0.1862 2p9hA 269 0.2072 c.93.1.1 139580 3edcA 360 0.2103 1lbiA 360 0.2147 c.93.1.1 35694 1jyfA 349 0.2220 c.93.1.1 67456 1efaA 333 0.2326 a.35.1.5,c.93.1.1 17106,35691 2rgyA 290 0.2336 2qu7A 288 0.2533 3egcA 291 0.2629 2pe5A 330 0.2974 a.35.1.5,c.93.1.1 149392,149393 1jyeA 349 0.3180 c.93.1.1 67455 3gybA 280 0.3327 2iksA 293 0.3463 3jy6A 276 0.5107 3hcwA 295 0.7412 3kkeA 303 0.8432 2fqxA 318 1.098 8abpA 306 1.105 c.93.1.1 35647 3e61A 277 1.218 1abeA 306 1.307 c.93.1.1 35648 3k9cA 289 1.354 2eq5A 228 1.913 1bapA 306 2.219 c.93.1.1 35654 3h4tA 404 2.986 2hqbA 296 3.108 3h5tA 366 3.190 1bykA 255 4.322 c.93.1.1 35706 2wrzA 306 5.085 1pwhA 327 5.767 c.79.1.1 95224 3g85A 289 6.615 3cs3A 277 7.514 3e70C 328 8.045 1pn3A 404 10.08 c.87.1.5 94938 3d8uA 275 11.58 3jvdA 333 11.75 1wcxA 261 13.88 1wcwA 261 13.98 3gv0A 288 14.05 1vcnA 550 14.41 c.23.16.1,c.37.1.10 108506,108507 2j8gA 339 14.44 b.109.1.1,c.1.8.8 147915,147916 3d8tA 286 16.26 2ixuA 339 16.30 b.109.1.1,c.1.8.8 147830,147831 1h09A 338 16.52 b.109.1.1,c.1.8.8 83420,83421 3bfjA 387 16.64 1vcoA 550 17.00 c.23.16.1,c.37.1.10 108508,108509 3lerA 301 17.18 1so4A 216 19.17 c.1.2.3 105836 1obaA 339 22.47 b.109.1.1,c.1.8.8 92753,92754 1gsoA 431 22.78 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1q6oA 216 26.03 c.1.2.3 95986 2f48A 555 26.31 c.89.1.1 132915 1so3A 216 27.74 c.1.2.3 105834 1y0bA 197 30.12 c.61.1.1 122476 2egxA 269 31.40 1so5A 216 32.89 c.1.2.3 105838 2dr1A 386 33.68 1so6A 216 36.48 c.1.2.3 105840 3fn4A 401 37.31 2gsdA 402 37.82 1xbyA 216 38.07 c.1.2.3 121846 1vljA 407 38.09 e.22.1.2 108832 3bh1A 507 39.18 3bo9A 326 43.89 3ff1A 446 46.26 3gb6A 323 46.59 2w3zA 311 47.30 3ce9A 354 47.34 2fxvA 194 47.75 c.61.1.1 134342 2cb0A 333 48.97 2ji4A 379 50.25 1p5jA 372 50.50 c.79.1.1 104067 1xbzA 216 51.01 c.1.2.3 121848 3ixmA 240 54.46 2h0aA 276 57.66 1iirA 415 58.76 c.87.1.5 62453 2tpsA 227 59.32 c.1.3.1 28591 2iswA 323 60.98 3gayA 323 61.41 3guxA 314 64.41 3he8A 149 66.55 1g69A 228 66.77 c.1.3.1 60313 2vlbA 251 66.82 1g4sA 226 66.82 c.1.3.1 60247 1g6cA 227 66.82 c.1.3.1 60315 3ixlA 240 66.83 1g67A 225 67.07 c.1.3.1 60311 1lokA 291 69.07 c.56.5.4 78122 1rtqA 299 69.80 c.56.5.4 97819 2yxbA 161 71.48 1lvwA 295 73.98 c.68.1.6 84723 2nacA 393 74.18 c.2.1.4,c.23.12.1 30088,31348 3b3tA 291 75.01 3dtvA 240 75.64 1q50A 561 75.79 c.80.1.2 104535 3dg9A 248 76.23 1qf9A 194 77.44 c.37.1.1 31848 3b3vA 291 77.84 2go1A 401 77.88 2kptA 148 77.96 2anpA 291 78.62 c.56.5.4 127056 1itzA 675 78.85 c.36.1.10,c.36.1.6,c.48.1.1 76797,76798,76799 1w3wA 327 79.58 2gkgA 127 81.73 1wq5A 268 82.43 c.1.2.4 121163 2v9dA 343 83.78 2nt3A 127 85.33 3b35A 291 85.53 3hltA 266 88.86 1w45A 327 89.10