# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3hutA 358 8.87e-29 3i09A 375 1.08e-28 1usgA 346 1.53e-28 c.93.1.1 99864 3i45A 387 3.63e-28 1z15A 344 5.37e-28 1peaA 385 7.27e-28 c.93.1.1 35662 1pea 385 1.12e-27 3lopA 364 3.74e-27 3lmkA 492 4.80e-26 3lkbA 392 5.48e-26 3ks9A 496 1.34e-25 1ewkA 490 3.13e-25 c.93.1.1 35712 1dp4A 435 3.29e-25 c.93.1.1 35710 3h5lA 419 3.50e-25 3eafA 391 4.91e-25 3h6gA 395 4.65e-24 2e4uA 555 9.42e-24 1jdpA 441 1.96e-22 c.93.1.1 62906 3h5vA 394 2.04e-22 3ckmA 327 2.77e-22 c.93.1.1 156739 2wjwA 388 3.01e-22 3jpwA 363 7.98e-20 2qh8A 302 3.53e-09 3lftA 295 1.98e-08 3lkvA 302 3.21e-08 1jx6A 342 1.04e-07 c.93.1.1 67406 1tjyA 316 1.58e-07 c.93.1.1 107062 1gudA 288 1.79e-07 c.93.1.1 83326 3ksmA 276 5.22e-07 3ejwA 315 7.31e-07 2qu7A 288 1.01e-06 2rjoA 332 1.56e-06 2iksA 293 1.58e-06 3brsA 289 2.10e-06 2qvcA 313 2.74e-06 2vk2A 306 3.00e-06 2ioyA 283 4.67e-06 2dri 271 5.74e-06 3l6uA 293 6.51e-06 3l49A 291 6.65e-06 2fn9A 290 1.00e-05 3d02A 303 1.21e-05 2driA 271 1.43e-05 c.93.1.1 35637 3c6qA 311 1.62e-05 3bilA 348 1.71e-05 2h3hA 313 1.72e-05 2fvyA 309 2.31e-05 c.93.1.1 134227 3h75A 350 2.44e-05 3g1wA 305 3.30e-05 3gbvA 304 3.80e-05 3brqA 296 4.02e-05 3hs3A 277 4.09e-05 1bykA 255 4.14e-05 c.93.1.1 35706 2fqxA 318 4.25e-05 1jyeA 349 4.65e-05 c.93.1.1 67455 3ctpA 330 5.48e-05 3egcA 291 0.000110 1dbqA 289 0.000111 c.93.1.1 35666 2o20A 332 0.000129 2fepA 289 0.000132 3hcwA 295 0.000147 3k4hA 292 0.000212 3c3kA 285 0.000270 3h5oA 339 0.000351 1jftA 340 0.000392 a.35.1.5,c.93.1.1 66652,66653 3e61A 277 0.000415 8abp 306 0.000443 3d8uA 275 0.000659 3kjxA 344 0.000675 3cs3A 277 0.000679 3gybA 280 0.000689 3gv0A 288 0.000740 2rgyA 290 0.000787 3jy6A 276 0.000821 8abpA 306 0.000953 c.93.1.1 35647 3k9cA 289 0.001041 2hqbA 296 0.001511 3e3mA 355 0.001742 1gca 309 0.001914 3kkeA 303 0.002117 3huuA 305 0.002976 3jvdA 333 0.004171 3bblA 287 0.005236 3clkA 290 0.007295 3h5tA 366 0.02323 3g85A 289 0.02690 2h0aA 276 0.06631 2eq5A 228 1.925 1fuiA 591 3.819 b.43.2.1,c.85.1.1 25674,35444 2vlbA 251 5.062 3ixmA 240 5.465 1rrmA 386 6.082 e.22.1.2 105081 2bw0A 329 8.199 b.46.1.1,c.65.1.1 129303,129304 1vljA 407 9.301 e.22.1.2 108832 3fzqA 274 11.48 3ixlA 240 13.97 3dg9A 248 14.91 3dr3A 337 14.95 2dgdA 223 15.94 2dwcA 433 17.53 2ajtA 500 17.56 b.43.2.2,c.85.1.2 126894,126895 1o2dA 371 18.66 e.22.1.2 86591 2zskA 226 18.89 1jr2A 286 19.77 c.113.1.1 67111 1jxhA 288 19.94 c.72.1.2 67415 3elbA 341 20.63 3hl0A 353 21.45 3flkA 364 21.97 1s3iA 310 22.48 b.46.1.1,c.65.1.1 98435,98436 3dahA 319 22.57 1zcjA 463 22.61 2q5cA 196 24.42 1twdA 256 25.30 c.1.30.1 107397 1udcA 338 26.55 c.2.1.2 29785 1s1pA 331 27.73 c.1.7.1 98350 1xrsB 262 27.86 c.23.6.1,d.230.4.1 115884,115885 1mvoA 136 29.99 c.23.1.1 79513 1pb1A 416 30.15 c.77.1.1 88014 2pl1A 121 30.90 c.23.1.1 149610 2z1dA 372 31.13 1pwhA 327 31.90 c.79.1.1 95224 1tca 317 32.06 3en0A 291 32.08 2yxbA 161 32.32 1drwA 273 32.36 c.2.1.3,d.81.1.3 30057,39972 1ymqA 261 32.57 c.108.1.10 123707 2yw2A 424 32.91 1gsoA 431 33.67 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 3h4zA 568 34.38 2yrxA 451 34.73 1b00A 127 35.61 c.23.1.1 31122 3hlyA 161 38.03 3erpA 353 38.60 3h74A 282 39.41 2dkaA 544 40.06 3jr2A 218 40.50 3lmzA 257 40.53 2oqrA 230 41.07 3a10A 116 41.52 2zbwA 335 42.17 3dc8A 490 43.79 1dbwA 126 43.83 c.23.1.1 31095 2p0oA 372 43.98 3figA 646 45.50 1wqaA 455 46.05 1hqsA 423 46.46 c.77.1.1 61154 3enkA 341 47.39 1sr9A 644 48.89 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 3k5iA 403 49.16 1dv2A 452 49.71 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1zd3A 555 49.98 c.108.1.2,c.69.1.11 124930,124931 2ddmA 283 50.13 1bgvA 449 51.02 c.2.1.7,c.58.1.1 30217,33865 2dvtA 327 51.46 c.1.9.15 131793 3f8dA 323 51.66 3lteA 132 52.24 3i6iA 346 52.80 3e8xA 236 52.87 1j0aA 325 53.16 c.79.1.1 83871 1ys7A 233 53.31 a.4.6.1,c.23.1.1 123961,123962 3iv7A 364 54.05 1trbA 320 54.43 c.3.1.5,c.3.1.5 30529,30530 1ve1A 304 54.69 c.79.1.1 120007 3e4rA 324 54.84 1vc4A 254 56.27 c.1.2.4 100557 2regA 298 56.27 1xi3A 215 57.64 c.1.3.1 109601 1o58A 303 57.68 c.79.1.1 92491 1ek6A 348 59.76 c.2.1.2 29800 1gesA 450 60.03 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2r00A 336 60.14 2pzmA 330 60.73 2gkgA 127 61.29 1dv1A 449 61.87 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1w24A 182 62.28 d.159.1.7 120579 1kjqA 391 62.37 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1iow 306 62.45 3hblA 1150 62.90 1b74A 254 63.10 c.78.2.1,c.78.2.1 35264,35265 1kgsA 225 63.44 a.4.6.1,c.23.1.1 68596,68597 1p5dX 463 63.54 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 3f6rA 148 63.60 1ly1A 181 65.00 c.37.1.1 74334 3ij6A 312 65.80 2w37A 359 66.19 1a9xA 1058 67.25 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1s8nA 205 67.30 c.23.1.1 105374 3buvA 326 67.47 1yioA 208 67.59 a.4.6.2,c.23.1.1 123326,123327 1vjrA 271 67.60 c.108.1.14 100832 3i5aA 334 67.67 3giwA 277 67.81 1us5A 314 68.09 c.94.1.1 99856 2hk0A 309 68.28 1vhwA 253 68.66 c.56.2.1 100706 3a9sA 595 68.70 2pk3A 321 69.02 1lt8A 406 69.45 c.1.26.1 78186 3kapA 147 69.53 1qh8A 478 71.28 c.92.2.3 35633 2ieeA 271 71.29 1jflA 228 71.74 c.78.2.1,c.78.2.1 71656,71657 1hslA 238 71.96 c.94.1.1 35804 1kcxA 518 72.34 b.92.1.3,c.1.9.6 90953,90954 3iivA 263 73.12 1reqA 727 73.12 c.1.19.1,c.23.6.1 29620,31247 2fl4A 149 73.15 d.108.1.1 133706 3fhaA 621 73.62 1oi7A 288 74.01 c.2.1.8,c.23.4.1 87049,87050 3irsA 291 74.07 3hg7A 324 74.71 2qjwA 176 75.01 2g29A 417 76.11 1tyoA 435 76.34 1jq5A 370 76.54 e.22.1.2 67084 3h7rA 331 76.73 1us0A 316 78.15 c.1.7.1 99850 1f0yA 302 78.33 a.100.1.3,c.2.1.6 18793,30197 1vimA 200 78.46 c.80.1.3 100758 3fniA 159 78.88 1iowA 306 79.03 c.30.1.2,d.142.1.1 31713,41481 1h1yA 228 79.22 c.1.2.2 76506 1xmxA 385 79.58 c.52.1.26 115568 2vvrA 149 79.65 1u0sY 118 80.30 c.23.1.1 107566 3i3wA 443 80.30 2z1mA 345 80.50 2ia4A 287 80.88 2gasA 307 81.74 3iebA 218 82.41 1v7cA 351 83.24 c.79.1.1 100446 2wnwA 447 84.04 1dqsA 393 84.05 e.22.1.1 43347 1vmeA 410 84.68 c.23.5.1,d.157.1.3 108893,108894 1y56B 382 84.91 3e9kA 465 85.78 2zsjA 352 85.94 1t2aA 375 86.67 c.2.1.2 99078 2r44A 331 86.73 1zl0A 311 87.48 c.8.10.1,c.23.16.7 125231,125232 2jbaA 127 87.55 2qs9A 194 88.30 1zuwA 272 88.63 1kq3A 376 88.72 e.22.1.2 68790 3cnyA 301 89.02 3l6bA 346 89.72 1p9lA 245 89.91 c.2.1.3,d.81.1.3 94393,94394