# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3hutA 358 6.08e-30 3i09A 375 8.02e-30 1usgA 346 1.25e-29 c.93.1.1 99864 3i45A 387 2.69e-29 1peaA 385 2.91e-29 c.93.1.1 35662 1z15A 344 5.17e-29 1pea 385 5.54e-29 3lopA 364 3.07e-28 3lkbA 392 3.88e-27 3lmkA 492 5.69e-27 3ks9A 496 1.02e-26 3h5lA 419 1.20e-26 1dp4A 435 2.24e-26 c.93.1.1 35710 1ewkA 490 2.81e-26 c.93.1.1 35712 3eafA 391 3.77e-26 2e4uA 555 5.02e-25 3h6gA 395 9.43e-25 2wjwA 388 1.29e-23 1jdpA 441 1.73e-23 c.93.1.1 62906 3ckmA 327 2.09e-23 c.93.1.1 156739 3h5vA 394 2.31e-23 3jpwA 363 9.52e-21 2qh8A 302 2.58e-09 3lftA 295 1.32e-08 3lkvA 302 2.22e-08 1jx6A 342 2.87e-08 c.93.1.1 67406 1tjyA 316 7.96e-08 c.93.1.1 107062 1gudA 288 1.09e-07 c.93.1.1 83326 3ejwA 315 4.09e-07 3ksmA 276 4.53e-07 2qu7A 288 8.55e-07 2qvcA 313 1.23e-06 2rjoA 332 1.72e-06 2iksA 293 1.81e-06 3brsA 289 2.69e-06 2dri 271 3.80e-06 2vk2A 306 3.99e-06 3d02A 303 4.24e-06 2ioyA 283 6.43e-06 3l6uA 293 7.54e-06 2h3hA 313 9.38e-06 2driA 271 9.44e-06 c.93.1.1 35637 3c6qA 311 9.54e-06 2fn9A 290 1.15e-05 3l49A 291 1.34e-05 3gbvA 304 1.64e-05 2fqxA 318 1.92e-05 3bilA 348 2.56e-05 3h75A 350 2.60e-05 1bykA 255 2.62e-05 c.93.1.1 35706 3g1wA 305 2.84e-05 3hs3A 277 2.96e-05 2fvyA 309 3.00e-05 c.93.1.1 134227 3brqA 296 4.21e-05 1dbqA 289 5.93e-05 c.93.1.1 35666 1jyeA 349 6.23e-05 c.93.1.1 67455 3ctpA 330 7.29e-05 3c3kA 285 0.000109 2fepA 289 0.000172 2o20A 332 0.000204 3hcwA 295 0.000234 3k4hA 292 0.000244 3egcA 291 0.000322 3jy6A 276 0.000375 3h5oA 339 0.000402 3gybA 280 0.000403 3e61A 277 0.000421 8abp 306 0.000494 1jftA 340 0.000508 a.35.1.5,c.93.1.1 66652,66653 3d8uA 275 0.000546 3cs3A 277 0.000556 3k9cA 289 0.000619 2hqbA 296 0.000754 3gv0A 288 0.000887 2rgyA 290 0.000924 8abpA 306 0.001231 c.93.1.1 35647 3kjxA 344 0.001293 3huuA 305 0.001565 1gca 309 0.001588 3kkeA 303 0.003105 3e3mA 355 0.003200 3jvdA 333 0.003991 3clkA 290 0.004711 3bblA 287 0.008964 3h5tA 366 0.02792 3g85A 289 0.06744 2h0aA 276 0.07303 2eq5A 228 1.594 2vlbA 251 4.380 1fuiA 591 4.583 b.43.2.1,c.85.1.1 25674,35444 1rrmA 386 5.418 e.22.1.2 105081 3ixmA 240 5.545 2bw0A 329 8.740 b.46.1.1,c.65.1.1 129303,129304 1drwA 273 11.17 c.2.1.3,d.81.1.3 30057,39972 1vljA 407 11.36 e.22.1.2 108832 3fzqA 274 12.19 2dwcA 433 12.65 3dr3A 337 14.09 3ixlA 240 14.17 1jxhA 288 14.77 c.72.1.2 67415 2p0oA 372 16.02 1zcjA 463 16.34 1pb1A 416 16.43 c.77.1.1 88014 3hl0A 353 16.46 1twdA 256 19.64 c.1.30.1 107397 1xmxA 385 19.82 c.52.1.26 115568 1s3iA 310 20.10 b.46.1.1,c.65.1.1 98435,98436 1ymqA 261 20.17 c.108.1.10 123707 2q5cA 196 22.26 3elbA 341 24.80 1jr2A 286 25.60 c.113.1.1 67111 2yxbA 161 25.80 1b74A 254 26.35 c.78.2.1,c.78.2.1 35264,35265 1lt8A 406 27.51 c.1.26.1 78186 3h74A 282 27.64 3flkA 364 29.39 1b00A 127 29.75 c.23.1.1 31122 3lmzA 257 29.92 2jfuA 291 30.05 1vhnA 318 30.33 c.1.4.1 100693 2z1dA 372 30.85 3f8dA 323 31.38 2yw2A 424 32.48 2yrxA 451 32.48 1tca 317 33.19 1trbA 320 33.92 c.3.1.5,c.3.1.5 30529,30530 1hqsA 423 34.10 c.77.1.1 61154 2dgdA 223 34.26 3k5iA 403 35.48 1o2dA 371 35.70 e.22.1.2 86591 2pl1A 121 35.92 c.23.1.1 149610 1jq5A 370 36.65 e.22.1.2 67084 2oqrA 230 38.89 2ajtA 500 39.70 b.43.2.2,c.85.1.2 126894,126895 1udcA 338 40.93 c.2.1.2 29785 3i5aA 334 41.36 2qs9A 194 41.57 2dvtA 327 41.87 c.1.9.15 131793 1mvoA 136 41.87 c.23.1.1 79513 3iv7A 364 42.39 3dg9A 248 43.02 3giwA 277 43.67 3a10A 116 44.24 2dkaA 544 44.56 1s1pA 331 45.53 c.1.7.1 98350 1zuwA 272 45.81 3ii0A 422 46.44 1ynuA 473 46.80 c.67.1.4 123762 2r00A 336 47.23 2zbwA 335 47.74 3iivA 263 47.91 1s8nA 205 48.22 c.23.1.1 105374 3lteA 132 48.36 1gsoA 431 49.00 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1ly1A 181 49.84 c.37.1.1 74334 3ij6A 312 49.98 1reqA 727 50.28 c.1.19.1,c.23.6.1 29620,31247 3hlyA 161 51.41 1tqhA 247 51.45 c.69.1.29 107225 3istA 269 51.58 3fniA 159 52.09 1tyoA 435 52.23 2r44A 331 53.21 1vi9A 299 53.52 c.72.1.5 100750 2e0cA 409 54.47 1hslA 238 54.86 c.94.1.1 35804 3en0A 291 55.13 1xrsB 262 55.14 c.23.6.1,d.230.4.1 115884,115885 1pg4A 652 55.47 e.23.1.1 88067 1yioA 208 55.66 a.4.6.2,c.23.1.1 123326,123327 3dahA 319 55.77 3jr2A 218 57.47 1a9xA 1058 57.89 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 3kapA 147 58.86 2pk3A 321 59.13 1dv1A 449 61.36 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1duvG 333 61.41 c.78.1.1,c.78.1.1 35228,35229 2gz1A 366 63.72 c.2.1.3,d.81.1.1 135887,135888 2zskA 226 65.10 2d1cA 496 65.26 2gkgA 127 65.41 2wnwA 447 65.50 1qh8A 478 66.35 c.92.2.3 35633 1f2dA 341 67.28 c.79.1.1 35298 1dbwA 126 67.50 c.23.1.1 31095 2pzmA 330 67.80 3iebA 218 68.59 1f0yA 302 68.81 a.100.1.3,c.2.1.6 18793,30197 1fmtA 314 69.27 b.46.1.1,c.65.1.1 25758,34174 1lst 239 69.75 2ddmA 283 70.15 2gzmA 267 70.46 1oi7A 288 71.20 c.2.1.8,c.23.4.1 87049,87050 1vc4A 254 71.62 c.1.2.4 100557 1zl0A 311 73.75 c.8.10.1,c.23.16.7 125231,125232 2jbaA 127 73.88 2ieeA 271 73.94 1jflA 228 74.00 c.78.2.1,c.78.2.1 71656,71657 3cvuA 543 74.16 1bgvA 449 75.76 c.2.1.7,c.58.1.1 30217,33865 1xi3A 215 76.21 c.1.3.1 109601 2ia4A 287 76.43 3dc8A 490 76.50 1rxyA 253 76.96 c.56.2.1 98065 2fl4A 149 77.23 d.108.1.1 133706 1t2aA 375 77.54 c.2.1.2 99078 2w37A 359 77.61 1vimA 200 78.17 c.80.1.3 100758 3f6rA 148 78.52 3hg7A 324 79.68 1iukA 140 80.67 c.2.1.8 83712 3breA 358 81.14 3h16A 154 83.09 1vhwA 253 84.40 c.56.2.1 100706 2z1mA 345 85.21 2q62A 247 85.32 3gwfA 540 86.40 3enkA 341 86.42 1p9lA 245 87.15 c.2.1.3,d.81.1.3 94393,94394 1vmeA 410 87.49 c.23.5.1,d.157.1.3 108893,108894 1iow 306 88.62 1ys7A 233 89.08 a.4.6.1,c.23.1.1 123961,123962 1t4bA 367 89.63 c.2.1.3,d.81.1.1 106406,106407