# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3hutA 358 2.59e-26 1usgA 346 2.86e-26 c.93.1.1 99864 3i09A 375 4.03e-26 3i45A 387 1.34e-25 1z15A 344 1.34e-25 1peaA 385 2.23e-25 c.93.1.1 35662 1pea 385 3.55e-25 3lopA 364 1.11e-24 3lmkA 492 9.56e-24 3lkbA 392 1.08e-23 3ks9A 496 1.18e-23 1ewkA 490 2.43e-23 c.93.1.1 35712 3h5lA 419 3.67e-23 3eafA 391 1.00e-22 1dp4A 435 1.11e-22 c.93.1.1 35710 3h6gA 395 4.06e-22 2e4uA 555 1.22e-21 1jdpA 441 1.14e-20 c.93.1.1 62906 3h5vA 394 1.45e-20 2wjwA 388 1.93e-20 3ckmA 327 2.52e-20 c.93.1.1 156739 3jpwA 363 4.91e-18 2qh8A 302 1.06e-08 3lkvA 302 1.08e-07 3lftA 295 1.45e-07 1jx6A 342 1.69e-07 c.93.1.1 67406 1gudA 288 4.60e-07 c.93.1.1 83326 1tjyA 316 9.27e-07 c.93.1.1 107062 3ejwA 315 1.98e-06 3ksmA 276 2.31e-06 2iksA 293 3.45e-06 2qu7A 288 4.56e-06 3c6qA 311 5.45e-06 2dri 271 6.28e-06 3brsA 289 7.54e-06 2qvcA 313 7.88e-06 2ioyA 283 1.06e-05 2driA 271 1.42e-05 c.93.1.1 35637 3l6uA 293 1.95e-05 3d02A 303 2.00e-05 2vk2A 306 2.81e-05 2rjoA 332 3.04e-05 2h3hA 313 3.88e-05 2fn9A 290 4.19e-05 3brqA 296 4.63e-05 2fvyA 309 4.79e-05 c.93.1.1 134227 3l49A 291 5.41e-05 3bilA 348 5.53e-05 2fqxA 318 5.74e-05 3h75A 350 7.08e-05 1jyeA 349 8.93e-05 c.93.1.1 67455 3g1wA 305 9.84e-05 3egcA 291 0.000105 3gbvA 304 0.000157 3hs3A 277 0.000194 2fepA 289 0.000199 3k4hA 292 0.000215 3c3kA 285 0.000226 1bykA 255 0.000254 c.93.1.1 35706 1dbqA 289 0.000281 c.93.1.1 35666 3ctpA 330 0.000323 2o20A 332 0.000392 3jy6A 276 0.000407 3h5oA 339 0.000446 8abp 306 0.000450 3kjxA 344 0.000472 3hcwA 295 0.000514 1jftA 340 0.000542 a.35.1.5,c.93.1.1 66652,66653 3cs3A 277 0.000756 3gv0A 288 0.000936 3k9cA 289 0.000996 3e61A 277 0.001011 2rgyA 290 0.001081 2hqbA 296 0.001111 3gybA 280 0.001187 3d8uA 275 0.001219 8abpA 306 0.001486 c.93.1.1 35647 3kkeA 303 0.001853 3huuA 305 0.002411 3e3mA 355 0.002749 1gca 309 0.002798 3bblA 287 0.004355 3clkA 290 0.009461 3jvdA 333 0.009481 3g85A 289 0.01049 3h5tA 366 0.02341 2h0aA 276 0.08269 1rrmA 386 5.250 e.22.1.2 105081 2eq5A 228 5.367 1jr2A 286 6.045 c.113.1.1 67111 3fzqA 274 9.913 2vlbA 251 13.67 2pqmA 343 17.12 1fuiA 591 17.48 b.43.2.1,c.85.1.1 25674,35444 2yrxA 451 19.08 3ixmA 240 19.25 2q5cA 196 19.70 3hl0A 353 20.77 1mvoA 136 23.05 c.23.1.1 79513 3iv7A 364 23.25 2pl1A 121 23.32 c.23.1.1 149610 1vljA 407 23.83 e.22.1.2 108832 2oqrA 230 25.44 3dg9A 248 27.00 1oywA 523 27.55 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2z1dA 372 27.63 1xrsB 262 29.89 c.23.6.1,d.230.4.1 115884,115885 3lp8A 442 30.57 1kgsA 225 30.68 a.4.6.1,c.23.1.1 68596,68597 1s1pA 331 31.67 c.1.7.1 98350 1m7yA 435 32.44 c.67.1.4 78761 1a9xA 1058 32.90 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1dbwA 126 33.60 c.23.1.1 31095 1o2dA 371 34.46 e.22.1.2 86591 1v4vA 376 35.10 c.87.1.3 100313 1zd3A 555 35.70 c.108.1.2,c.69.1.11 124930,124931 1tqhA 247 37.07 c.69.1.29 107225 1b00A 127 37.44 c.23.1.1 31122 1o58A 303 37.52 c.79.1.1 92491 3dr3A 337 37.55 2regA 298 39.29 2jfuA 291 40.74 3ixlA 240 40.75 1jq5A 370 41.26 e.22.1.2 67084 1zuwA 272 41.81 2yw2A 424 42.34 1ynuA 473 46.90 c.67.1.4 123762 1pwhA 327 47.30 c.79.1.1 95224 2bw0A 329 47.80 b.46.1.1,c.65.1.1 129303,129304 2dgdA 223 48.91 1udcA 338 49.23 c.2.1.2 29785 3buvA 326 49.27 1vjrA 271 50.21 c.108.1.14 100832 1gsoA 431 52.02 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2gkgA 127 52.24 1drwA 273 52.51 c.2.1.3,d.81.1.3 30057,39972 1fc4A 401 53.29 c.67.1.4 59760 1u0sY 118 53.33 c.23.1.1 107566 1dv1A 449 53.53 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2cbiA 594 54.84 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181 2ajtA 500 55.90 b.43.2.2,c.85.1.2 126894,126895 1jxhA 288 56.28 c.72.1.2 67415 2rhwA 283 56.40 c.69.1.10 152053 3i6iA 346 56.50 1m1nB 522 57.86 c.92.2.3 78418 2plnA 137 58.15 1rkqA 282 58.25 c.108.1.10 97621 1ys7A 233 58.80 a.4.6.1,c.23.1.1 123961,123962 3istA 269 59.31 3lteA 132 59.92 3fniA 159 61.09 3dc8A 490 61.10 3h4zA 568 62.11 1vhnA 318 62.53 c.1.4.1 100693 1qh8A 478 63.88 c.92.2.3 35633 2dwuA 276 63.92 1us5A 314 65.74 c.94.1.1 99856 1p5dX 463 65.96 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1dqsA 393 66.45 e.22.1.1 43347 2dwcA 433 66.96 1s8nA 205 67.60 c.23.1.1 105374 2pl5A 366 67.84 c.69.1.40 149611 1xmxA 385 68.03 c.52.1.26 115568 2jbaA 127 69.37 3flkA 364 69.93 1owlA 484 70.06 a.99.1.1,c.28.1.1 93647,93648 2zsjA 352 70.98 3ju2A 284 71.10 2zbwA 335 71.40 2pzmA 330 71.75 3dahA 319 71.98 1zh2A 121 72.17 c.23.1.1 125069 2hk0A 309 72.20 1pb1A 416 72.45 c.77.1.1 88014 2w70A 449 72.85 3k5iA 403 73.51 1lt8A 406 73.75 c.1.26.1 78186 1oxkB 134 73.83 c.23.1.1 93691 3dwgA 325 74.99 1qtwA 285 75.44 c.1.15.1 29392 3e9kA 465 76.33 1ly1A 181 76.85 c.37.1.1 74334 3e4rA 324 78.69 3ii0A 422 79.00 3cnyA 301 79.20 1kcxA 518 79.40 b.92.1.3,c.1.9.6 90953,90954 2gzmA 267 80.59 2qv7A 337 81.25 e.52.1.2 151386 1k77A 260 81.43 c.1.15.5 72096 3a10A 116 81.59 1xi3A 215 82.81 c.1.3.1 109601 1v7cA 351 83.18 c.79.1.1 100446 2r6jA 318 83.51 2cstA 411 83.58 c.67.1.1 34273 3eaqA 212 83.78 1srrA 124 83.87 c.23.1.1 31110 2dkaA 544 85.48 1u94A 356 85.74 c.37.1.11,d.48.1.1 107743,107744 1s3iA 310 86.55 b.46.1.1,c.65.1.1 98435,98436 3ce9A 354 86.68 3giwA 277 86.81 1e4eA 343 86.97 c.30.1.2,d.142.1.1 59221,59222 3f8dA 323 87.34 3c3mA 138 88.09 3lmzA 257 89.58