# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3hutA 358 1.41e-25 1usgA 346 1.98e-25 c.93.1.1 99864 3i09A 375 2.03e-25 3i45A 387 6.63e-25 1z15A 344 1.03e-24 1peaA 385 1.09e-24 c.93.1.1 35662 1pea 385 1.67e-24 3lopA 364 4.70e-24 3lmkA 492 3.88e-23 3ks9A 496 4.17e-23 3lkbA 392 4.45e-23 1ewkA 490 7.85e-23 c.93.1.1 35712 3h5lA 419 1.63e-22 3eafA 391 2.62e-22 1dp4A 435 5.07e-22 c.93.1.1 35710 3h6gA 395 1.79e-21 2e4uA 555 4.77e-21 1jdpA 441 4.16e-20 c.93.1.1 62906 3h5vA 394 5.98e-20 2wjwA 388 7.76e-20 3ckmA 327 9.11e-20 c.93.1.1 156739 3jpwA 363 1.16e-17 2qh8A 302 1.66e-08 3lkvA 302 1.41e-07 1jx6A 342 1.76e-07 c.93.1.1 67406 3lftA 295 2.20e-07 1gudA 288 4.51e-07 c.93.1.1 83326 1tjyA 316 1.50e-06 c.93.1.1 107062 3ksmA 276 2.59e-06 3ejwA 315 2.80e-06 2iksA 293 4.93e-06 2qu7A 288 5.90e-06 3c6qA 311 7.01e-06 2dri 271 7.05e-06 2qvcA 313 8.97e-06 3brsA 289 1.18e-05 2ioyA 283 1.44e-05 2driA 271 1.59e-05 c.93.1.1 35637 3d02A 303 2.31e-05 3l6uA 293 2.37e-05 2rjoA 332 2.98e-05 2vk2A 306 3.04e-05 3l49A 291 4.69e-05 2fn9A 290 4.78e-05 3brqA 296 4.83e-05 2h3hA 313 6.09e-05 3h75A 350 6.38e-05 2fqxA 318 6.60e-05 2fvyA 309 6.66e-05 c.93.1.1 134227 3bilA 348 7.87e-05 1jyeA 349 0.000122 c.93.1.1 67455 3g1wA 305 0.000129 3egcA 291 0.000181 3gbvA 304 0.000188 2fepA 289 0.000245 3hs3A 277 0.000283 1bykA 255 0.000292 c.93.1.1 35706 3c3kA 285 0.000302 3k4hA 292 0.000321 1dbqA 289 0.000336 c.93.1.1 35666 3ctpA 330 0.000345 3jy6A 276 0.000366 8abp 306 0.000539 3h5oA 339 0.000603 3kjxA 344 0.000618 2o20A 332 0.000642 1jftA 340 0.000780 a.35.1.5,c.93.1.1 66652,66653 3k9cA 289 0.000872 3cs3A 277 0.000888 3hcwA 295 0.000898 3gv0A 288 0.001029 2rgyA 290 0.001045 3e61A 277 0.001062 2hqbA 296 0.001255 3d8uA 275 0.001280 3gybA 280 0.001349 8abpA 306 0.002077 c.93.1.1 35647 3kkeA 303 0.002228 3huuA 305 0.002250 3e3mA 355 0.003056 3bblA 287 0.004917 1gca 309 0.005266 3jvdA 333 0.01120 3clkA 290 0.01223 3g85A 289 0.01451 3h5tA 366 0.02477 2h0aA 276 0.09384 2eq5A 228 2.830 1jr2A 286 4.646 c.113.1.1 67111 1rrmA 386 5.276 e.22.1.2 105081 2vlbA 251 9.118 3fzqA 274 10.91 3ixmA 240 16.80 1fuiA 591 17.91 b.43.2.1,c.85.1.1 25674,35444 2q5cA 196 20.38 1vljA 407 20.60 e.22.1.2 108832 2pqmA 343 20.71 3dg9A 248 23.07 2pl1A 121 24.65 c.23.1.1 149610 2yrxA 451 24.95 1xrsB 262 25.01 c.23.6.1,d.230.4.1 115884,115885 3hl0A 353 26.29 2z1dA 372 27.35 3iv7A 364 28.03 1a9xA 1058 28.42 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 2oqrA 230 30.03 1v4vA 376 30.65 c.87.1.3 100313 1mvoA 136 31.16 c.23.1.1 79513 1jq5A 370 31.97 e.22.1.2 67084 1zd3A 555 34.55 c.108.1.2,c.69.1.11 124930,124931 2jfuA 291 35.22 2dwcA 433 35.90 1tqhA 247 35.96 c.69.1.29 107225 1b00A 127 36.02 c.23.1.1 31122 1oywA 523 36.20 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 3flkA 364 37.26 3dr3A 337 37.40 3ixlA 240 37.57 1m7yA 435 37.88 c.67.1.4 78761 1vjrA 271 38.43 c.108.1.14 100832 1zuwA 272 39.00 1s1pA 331 41.02 c.1.7.1 98350 2dgdA 223 41.16 1pb1A 416 41.58 c.77.1.1 88014 2ajtA 500 42.90 b.43.2.2,c.85.1.2 126894,126895 1o58A 303 42.95 c.79.1.1 92491 1dbwA 126 43.06 c.23.1.1 31095 1o2dA 371 45.00 e.22.1.2 86591 1udcA 338 45.04 c.2.1.2 29785 1drwA 273 47.16 c.2.1.3,d.81.1.3 30057,39972 2cbiA 594 48.69 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181 2zbwA 335 48.82 3buvA 326 48.87 3lp8A 442 49.12 1jxhA 288 49.51 c.72.1.2 67415 2bw0A 329 49.86 b.46.1.1,c.65.1.1 129303,129304 1kgsA 225 50.15 a.4.6.1,c.23.1.1 68596,68597 1ynuA 473 51.51 c.67.1.4 123762 1twdA 256 52.22 c.1.30.1 107397 2gkgA 127 52.76 2yw2A 424 53.00 2w70A 449 53.73 3istA 269 54.31 2dwuA 276 54.55 3fniA 159 55.41 2regA 298 57.04 2pl5A 366 58.44 c.69.1.40 149611 1pwhA 327 59.03 c.79.1.1 95224 3i6iA 346 59.77 1p5dX 463 60.70 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1fc4A 401 61.02 c.67.1.4 59760 2gzmA 267 61.37 1ys7A 233 61.73 a.4.6.1,c.23.1.1 123961,123962 2plnA 137 62.76 1m1nB 522 63.08 c.92.2.3 78418 1xmxA 385 63.79 c.52.1.26 115568 3ju2A 284 63.91 3dahA 319 64.25 1dv1A 449 64.60 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1vhnA 318 65.12 c.1.4.1 100693 1ly1A 181 65.54 c.37.1.1 74334 1u0sY 118 65.64 c.23.1.1 107566 2zskA 226 67.40 3e9kA 465 67.57 3f8dA 323 68.37 1s8nA 205 68.91 c.23.1.1 105374 3lteA 132 69.00 1gsoA 431 69.72 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1s3iA 310 69.79 b.46.1.1,c.65.1.1 98435,98436 1b74A 254 69.85 c.78.2.1,c.78.2.1 35264,35265 2jbaA 127 69.87 1k77A 260 71.29 c.1.15.5 72096 1rlmA 271 71.60 c.108.1.10 111860 3i0zA 389 72.01 1rkqA 282 72.08 c.108.1.10 97621 2pzmA 330 72.18 3ii0A 422 72.37 2zsjA 352 72.64 3cnyA 301 72.99 2r44A 331 74.29 2hk0A 309 75.35 1qh8A 478 75.52 c.92.2.3 35633 1dqsA 393 75.82 e.22.1.1 43347 3figA 646 76.11 2rhwA 283 76.16 c.69.1.10 152053 3h4zA 568 77.19 3giwA 277 78.31 3ce9A 354 78.53 1zcjA 463 79.72 1hqsA 423 79.85 c.77.1.1 61154 1cs0A 1073 80.19 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2zvrA 290 81.70 1tca 317 82.43 1zh2A 121 82.81 c.23.1.1 125069 1v7cA 351 84.99 c.79.1.1 100446 2dkaA 544 85.66 3iivA 263 86.29 2x4dA 271 86.31 1a0dA 440 87.45 c.1.15.3 29533 3h5dA 311 87.72 1ymqA 261 87.99 c.108.1.10 123707 3l23A 303 88.03 1kjqA 391 88.42 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618