# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3hutA 358 5.32e-27 3i09A 375 2.42e-26 1usgA 346 4.38e-26 c.93.1.1 99864 3i45A 387 4.98e-26 1z15A 344 1.44e-25 1peaA 385 2.15e-25 c.93.1.1 35662 1pea 385 3.86e-25 3lopA 364 4.03e-25 3lkbA 392 5.68e-24 3h5lA 419 1.50e-23 3lmkA 492 2.91e-23 1ewkA 490 1.06e-22 c.93.1.1 35712 3ks9A 496 1.23e-22 1dp4A 435 2.17e-22 c.93.1.1 35710 3eafA 391 2.40e-22 3h6gA 395 7.01e-22 3h5vA 394 2.46e-21 2wjwA 388 3.83e-21 2e4uA 555 5.22e-21 1jdpA 441 2.28e-20 c.93.1.1 62906 3ckmA 327 4.34e-19 c.93.1.1 156739 3jpwA 363 3.41e-18 2qh8A 302 8.91e-09 1jx6A 342 3.04e-08 c.93.1.1 67406 3lkvA 302 6.26e-08 3lftA 295 6.38e-08 3ejwA 315 1.71e-07 1tjyA 316 2.64e-07 c.93.1.1 107062 2iksA 293 1.11e-06 2qvcA 313 1.55e-06 1gudA 288 1.57e-06 c.93.1.1 83326 2h3hA 313 1.66e-06 2ioyA 283 2.26e-06 3ksmA 276 2.73e-06 2vk2A 306 2.78e-06 3l6uA 293 2.86e-06 2rjoA 332 3.16e-06 3brsA 289 3.24e-06 3d02A 303 3.35e-06 2qu7A 288 3.63e-06 2fvyA 309 5.28e-06 c.93.1.1 134227 3l49A 291 7.24e-06 2fn9A 290 7.32e-06 2dri 271 7.80e-06 3c6qA 311 9.40e-06 3gbvA 304 9.79e-06 2fqxA 318 1.13e-05 1bykA 255 1.18e-05 c.93.1.1 35706 2driA 271 1.57e-05 c.93.1.1 35637 3bilA 348 2.23e-05 3h75A 350 2.50e-05 1jyeA 349 2.58e-05 c.93.1.1 67455 3hs3A 277 2.68e-05 3brqA 296 3.27e-05 3c3kA 285 3.82e-05 3g1wA 305 3.90e-05 3h5oA 339 4.90e-05 2o20A 332 5.39e-05 8abp 306 6.92e-05 2fepA 289 7.14e-05 8abpA 306 7.44e-05 c.93.1.1 35647 2hqbA 296 7.49e-05 3e3mA 355 8.82e-05 3ctpA 330 0.000100 1gca 309 0.000122 1dbqA 289 0.000125 c.93.1.1 35666 3egcA 291 0.000140 3kjxA 344 0.000190 3d8uA 275 0.000207 3k4hA 292 0.000250 3jy6A 276 0.000321 3k9cA 289 0.000359 2rgyA 290 0.000436 3hcwA 295 0.000447 3gybA 280 0.000518 3cs3A 277 0.000694 3e61A 277 0.000721 1jftA 340 0.000725 a.35.1.5,c.93.1.1 66652,66653 3jvdA 333 0.001038 3gv0A 288 0.001209 3kkeA 303 0.001768 3huuA 305 0.002023 3clkA 290 0.002180 3bblA 287 0.003930 3g85A 289 0.005131 3h5tA 366 0.006604 2h0aA 276 0.01510 1vljA 407 1.901 e.22.1.2 108832 3dg9A 248 2.910 1rrmA 386 3.251 e.22.1.2 105081 2vlbA 251 3.745 3fzqA 274 5.975 3ixmA 240 6.033 1o2dA 371 7.363 e.22.1.2 86591 2q5cA 196 7.784 2eq5A 228 8.212 1jr2A 286 8.466 c.113.1.1 67111 3ce9A 354 8.726 2dgdA 223 9.345 3ixlA 240 10.69 1jq5A 370 11.90 e.22.1.2 67084 2w70A 449 12.98 1mvoA 136 15.87 c.23.1.1 79513 1udcA 338 17.01 c.2.1.2 29785 1kq3A 376 17.03 e.22.1.2 68790 1dbwA 126 17.65 c.23.1.1 31095 1vjrA 271 18.84 c.108.1.14 100832 3gpiA 286 21.12 2vvrA 149 21.82 1o58A 303 22.03 c.79.1.1 92491 2yrxA 451 22.27 1dv1A 449 22.96 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1zuwA 272 23.46 2pjuA 225 25.00 c.92.3.1 149579 2ddmA 283 25.34 1ys7A 233 26.16 a.4.6.1,c.23.1.1 123961,123962 3fniA 159 26.26 1b74A 254 26.63 c.78.2.1,c.78.2.1 35264,35265 1twdA 256 26.76 c.1.30.1 107397 3irsA 291 28.08 1zl0A 311 28.22 c.8.10.1,c.23.16.7 125231,125232 1gsoA 431 28.29 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1cs0A 1073 28.38 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2hbvA 334 28.41 c.1.9.15 136320 1ycdA 243 29.74 1kgsA 225 30.19 a.4.6.1,c.23.1.1 68596,68597 3e8xA 236 30.31 3ijpA 288 30.91 1a9xA 1058 31.14 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 2jbaA 127 31.42 3l6bA 346 31.55 1jxhA 288 32.68 c.72.1.2 67415 2pqmA 343 34.24 3glkA 540 35.16 2qs9A 194 35.26 3clhA 343 36.71 2yw2A 424 36.80 1vhwA 253 37.32 c.56.2.1 100706 3dr3A 337 37.82 1iow 306 38.21 3dahA 319 38.83 2gasA 307 39.59 3h16A 154 39.86 3lerA 301 39.86 3jr2A 218 40.38 1j0aA 325 40.79 c.79.1.1 83871 1ta9A 450 41.58 2x4dA 271 42.80 2qjwA 176 42.87 1pwhA 327 43.64 c.79.1.1 95224 3iveA 509 45.52 1rkqA 282 47.07 c.108.1.10 97621 3enkA 341 47.32 3hblA 1150 48.13 2dc1A 236 48.48 1pb1A 416 48.58 c.77.1.1 88014 3a10A 116 48.64 3lmzA 257 48.74 2klbA 154 48.84 1b00A 127 49.22 c.23.1.1 31122 2q3bA 313 49.27 1iowA 306 49.91 c.30.1.2,d.142.1.1 31713,41481 1us5A 314 50.94 c.94.1.1 99856 2plnA 137 51.67 1vl0A 292 52.06 c.2.1.2 108704 3kapA 147 52.17 2v03A 303 52.21 1dqsA 393 52.50 e.22.1.1 43347 1tqhA 247 52.56 c.69.1.29 107225 2ho4A 259 52.72 2w37A 359 53.31 2cftA 298 53.39 2pn1A 331 53.72 1lt8A 406 53.82 c.1.26.1 78186 3h74A 282 54.03 3flkA 364 55.81 2pl1A 121 55.89 c.23.1.1 149610 3dgfC 122 56.71 2dwcA 433 56.80 1ymqA 261 56.86 c.108.1.10 123707 1drwA 273 56.88 c.2.1.3,d.81.1.3 30057,39972 1owlA 484 57.44 a.99.1.1,c.28.1.1 93647,93648 3lwbA 373 57.58 1zjjA 263 57.62 2qipA 165 57.73 1fuiA 591 58.26 b.43.2.1,c.85.1.1 25674,35444 3lteA 132 59.02 2r6jA 318 59.09 1vliA 385 59.12 b.85.1.1,c.1.10.6 108830,108831 2z1dA 372 59.26 3hlyA 161 59.46 1tmyA 120 59.52 c.23.1.1 31083 2d1cA 496 59.67 1udbA 338 60.10 c.2.1.2 29787 2yxbA 161 61.13 1o66A 275 61.50 c.1.12.8 92547 1j0dA 341 61.78 c.79.1.1 83902 3ij6A 312 62.39 2qt3A 403 63.61 3lp8A 442 64.36 2gruA 368 64.79 1u0sY 118 65.16 c.23.1.1 107566 2fp4B 395 65.23 c.23.4.1,d.142.1.4 133897,133898 1y80A 210 66.24 3hl0A 353 66.34 3i42A 127 67.05 2zdrA 349 67.99 b.85.1.1,c.1.10.6 154398,154399 1w24A 182 68.10 d.159.1.7 120579 2qvgA 143 68.16 3g8cA 444 69.34 2dwuA 276 70.42 1hqsA 423 71.88 c.77.1.1 61154 1vhnA 318 72.47 c.1.4.1 100693 1h1yA 228 72.87 c.1.2.2 76506 3eb2A 300 73.41 3labA 217 73.53 3dtvA 240 73.56 1m7yA 435 74.62 c.67.1.4 78761 2c4nA 250 75.18 c.108.1.14 129837 2csuA 457 75.27 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 3euwA 344 76.43 2i33A 258 76.46 3i0zA 389 76.47 1rlmA 271 76.61 c.108.1.10 111860 1ub0A 258 76.70 c.72.1.2 88394 1p0kA 349 77.18 c.1.4.1 87648 1duvG 333 77.54 c.78.1.1,c.78.1.1 35228,35229 1x0lA 333 79.65 3iebA 218 80.42 3cvuA 543 81.25 1nvmA 345 81.29 a.5.7.1,c.1.10.5 86249,86250 3h5dA 311 82.46 1wv2A 265 83.78 c.1.31.1 114910 3exrA 221 84.21 3gl9A 122 84.95 5nllA 138 85.22 c.23.5.1 31198 1vc4A 254 86.30 c.1.2.4 100557 2fk6A 320 86.41 d.157.1.7 133646 3fluA 297 86.78 1ve1A 304 87.66 c.79.1.1 120007 1xadA 345 87.74 c.77.1.1 35055 1np7A 489 87.77 a.99.1.1,c.28.1.1 80677,80678 3a28A 258 88.51 2jfuA 291 88.57 2bw0A 329 88.88 b.46.1.1,c.65.1.1 129303,129304 2r00A 336 88.95 3jteA 143 89.45 3c1oA 321 89.58