# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3hutA 358 8.26e-29 3i09A 375 1.16e-28 1usgA 346 2.68e-28 c.93.1.1 99864 3i45A 387 4.74e-28 1z15A 344 1.33e-27 1peaA 385 2.19e-27 c.93.1.1 35662 1pea 385 3.06e-27 3lopA 364 3.20e-27 3lkbA 392 7.91e-26 3lmkA 492 1.20e-25 3ks9A 496 1.37e-25 3h5lA 419 2.64e-25 1ewkA 490 4.23e-25 c.93.1.1 35712 1dp4A 435 5.98e-25 c.93.1.1 35710 3eafA 391 3.22e-24 3h6gA 395 8.20e-24 2e4uA 555 3.32e-23 2wjwA 388 9.88e-23 3h5vA 394 1.38e-22 1jdpA 441 2.67e-22 c.93.1.1 62906 3ckmA 327 6.16e-22 c.93.1.1 156739 3jpwA 363 1.92e-19 2qh8A 302 2.07e-09 3lftA 295 2.79e-08 1jx6A 342 2.97e-08 c.93.1.1 67406 3lkvA 302 4.25e-08 1gudA 288 1.73e-07 c.93.1.1 83326 3ejwA 315 1.84e-07 1tjyA 316 3.62e-07 c.93.1.1 107062 2qvcA 313 7.12e-07 2rjoA 332 1.20e-06 3ksmA 276 1.22e-06 3brsA 289 1.38e-06 2qu7A 288 1.74e-06 2ioyA 283 1.77e-06 2iksA 293 1.78e-06 2driA 271 2.21e-06 c.93.1.1 35637 2h3hA 313 2.89e-06 2dri 271 3.25e-06 3l6uA 293 3.34e-06 2fqxA 318 4.91e-06 3gbvA 304 5.38e-06 3d02A 303 6.69e-06 2fvyA 309 7.82e-06 c.93.1.1 134227 2fn9A 290 8.23e-06 2vk2A 306 8.85e-06 3g1wA 305 9.33e-06 3l49A 291 9.79e-06 3bilA 348 3.04e-05 1bykA 255 3.69e-05 c.93.1.1 35706 3h75A 350 4.04e-05 3c6qA 311 4.32e-05 1jyeA 349 4.56e-05 c.93.1.1 67455 3brqA 296 4.96e-05 3hs3A 277 5.74e-05 2fepA 289 8.13e-05 2o20A 332 9.53e-05 3hcwA 295 9.75e-05 1dbqA 289 0.000100 c.93.1.1 35666 3c3kA 285 0.000109 8abp 306 0.000128 3ctpA 330 0.000140 3egcA 291 0.000147 3k4hA 292 0.000150 3h5oA 339 0.000182 3kjxA 344 0.000187 3jy6A 276 0.000240 8abpA 306 0.000262 c.93.1.1 35647 1jftA 340 0.000267 a.35.1.5,c.93.1.1 66652,66653 3gv0A 288 0.000308 3e3mA 355 0.000365 3d8uA 275 0.000368 2rgyA 290 0.000384 1gca 309 0.000392 3k9cA 289 0.000635 3cs3A 277 0.000715 3gybA 280 0.000744 2hqbA 296 0.001235 3e61A 277 0.001681 3bblA 287 0.001694 3clkA 290 0.001822 3huuA 305 0.002209 3kkeA 303 0.003181 3jvdA 333 0.003624 3h5tA 366 0.005403 3g85A 289 0.01103 2h0aA 276 0.02961 1rrmA 386 2.180 e.22.1.2 105081 2eq5A 228 3.344 1vljA 407 3.893 e.22.1.2 108832 2vlbA 251 8.017 3dr3A 337 10.03 1o2dA 371 12.64 e.22.1.2 86591 2regA 298 12.82 2yw2A 424 13.95 3fzqA 274 14.42 3hl0A 353 15.53 3ce9A 354 16.84 1jq5A 370 17.57 e.22.1.2 67084 3lmzA 257 18.82 1twdA 256 18.93 c.1.30.1 107397 5nllA 138 21.03 c.23.5.1 31198 3ixmA 240 21.82 1ys7A 233 23.53 a.4.6.1,c.23.1.1 123961,123962 1mvoA 136 25.05 c.23.1.1 79513 1fuiA 591 26.33 b.43.2.1,c.85.1.1 25674,35444 2fb2A 340 27.45 1drwA 273 28.15 c.2.1.3,d.81.1.3 30057,39972 1s1pA 331 28.34 c.1.7.1 98350 1jr2A 286 33.09 c.113.1.1 67111 2p0oA 372 33.20 2q5cA 196 34.17 2yrxA 451 34.34 1qopA 268 35.59 c.1.2.4 28570 2rinA 298 37.08 1ymqA 261 37.26 c.108.1.10 123707 1us5A 314 42.64 c.94.1.1 99856 3hblA 1150 43.16 1ta9A 450 43.61 1zd3A 555 44.02 c.108.1.2,c.69.1.11 124930,124931 1gsoA 431 44.07 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 3dahA 319 44.13 2zskA 226 44.30 2pl1A 121 44.53 c.23.1.1 149610 2plnA 137 44.67 3erpA 353 44.86 3ixlA 240 45.48 2qipA 165 45.54 2q02A 272 46.03 c.1.15.4 149978 3fniA 159 47.12 1u94A 356 47.17 c.37.1.11,d.48.1.1 107743,107744 1dqsA 393 47.44 e.22.1.1 43347 3dg9A 248 47.52 1f0yA 302 47.99 a.100.1.3,c.2.1.6 18793,30197 1yx1A 264 48.00 c.1.15.7 124169 2ajtA 500 48.52 b.43.2.2,c.85.1.2 126894,126895 1nhpA 447 49.06 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 3lwbA 373 49.52 2yxbA 161 49.63 1tqhA 247 49.67 c.69.1.29 107225 2wnwA 447 49.97 1zl0A 311 53.34 c.8.10.1,c.23.16.7 125231,125232 1s8nA 205 53.51 c.23.1.1 105374 2pn1A 331 53.59 2bw0A 329 53.69 b.46.1.1,c.65.1.1 129303,129304 2fl4A 149 54.25 d.108.1.1 133706 3hlyA 161 55.12 1b00A 127 55.22 c.23.1.1 31122 1vjrA 271 55.41 c.108.1.14 100832 1pb1A 416 56.35 c.77.1.1 88014 1k77A 260 56.40 c.1.15.5 72096 3iv7A 364 56.60 3e9kA 465 57.64 2i87A 364 57.80 3a10A 116 59.10 1rxyA 253 59.14 c.56.2.1 98065 1f2dA 341 59.87 c.79.1.1 35298 1vmeA 410 60.15 c.23.5.1,d.157.1.3 108893,108894 1yioA 208 61.20 a.4.6.2,c.23.1.1 123326,123327 1vimA 200 62.09 c.80.1.3 100758 1kgsA 225 62.23 a.4.6.1,c.23.1.1 68596,68597 3h4zA 568 62.72 1dv1A 449 63.48 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 3elbA 341 64.95 1dbwA 126 65.18 c.23.1.1 31095 1h1yA 228 66.15 c.1.2.2 76506 1zcjA 463 66.73 3cnyA 301 67.05 2rhwA 283 67.08 c.69.1.10 152053 2klbA 154 67.98 3jteA 143 69.06 1w24A 182 69.09 d.159.1.7 120579 1zjjA 263 71.25 1vhnA 318 72.03 c.1.4.1 100693 3giwA 277 72.06 3iveA 509 72.19 3lteA 132 73.21 3k5iA 403 73.28 1wqaA 455 73.77 1xrsB 262 74.04 c.23.6.1,d.230.4.1 115884,115885 3irsA 291 74.83 1jxhA 288 75.38 c.72.1.2 67415 1jflA 228 76.09 c.78.2.1,c.78.2.1 71656,71657 1u0sY 118 76.77 c.23.1.1 107566 3flkA 364 76.90 1gveA 327 77.29 c.1.7.1 70597 2jbaA 127 77.92 1pwhA 327 78.23 c.79.1.1 95224 1zgzA 122 78.43 c.23.1.1 125065 1ly1A 181 78.88 c.37.1.1 74334 1oi7A 288 79.84 c.2.1.8,c.23.4.1 87049,87050 2z5lA 511 79.87 3jr2A 218 80.87 2dgdA 223 81.49 2w70A 449 82.50 3i6iA 346 83.11 1xi3A 215 83.91 c.1.3.1 109601 1a9xA 1058 84.96 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 3enkA 341 85.52 1o58A 303 86.42 c.79.1.1 92491 1fmtA 314 86.99 b.46.1.1,c.65.1.1 25758,34174 1j0dA 341 87.47 c.79.1.1 83902 1iow 306 87.92 1ve1A 304 87.94 c.79.1.1 120007 2cftA 298 88.34 3h16A 154 89.49