# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i09A 375 1.28e-28 3hutA 358 4.69e-28 3i45A 387 7.67e-28 1usgA 346 1.06e-27 c.93.1.1 99864 1peaA 385 3.14e-27 c.93.1.1 35662 1z15A 344 4.28e-27 1pea 385 4.65e-27 3lopA 364 8.87e-27 3lkbA 392 5.10e-26 3lmkA 492 7.03e-26 3ks9A 496 1.88e-25 1ewkA 490 3.12e-25 c.93.1.1 35712 3h5lA 419 1.28e-24 1dp4A 435 1.70e-24 c.93.1.1 35710 3eafA 391 1.80e-24 3h6gA 395 8.02e-24 2wjwA 388 1.91e-22 2e4uA 555 3.86e-22 1jdpA 441 5.82e-22 c.93.1.1 62906 3h5vA 394 6.04e-22 3ckmA 327 1.37e-21 c.93.1.1 156739 3jpwA 363 5.20e-19 2qh8A 302 4.33e-09 1jx6A 342 1.71e-08 c.93.1.1 67406 3lftA 295 6.05e-08 1tjyA 316 1.54e-07 c.93.1.1 107062 3ejwA 315 2.03e-07 3lkvA 302 2.09e-07 1gudA 288 2.19e-07 c.93.1.1 83326 2qvcA 313 1.09e-06 3brsA 289 1.41e-06 3ksmA 276 1.50e-06 2iksA 293 1.69e-06 2rjoA 332 1.99e-06 2driA 271 2.93e-06 c.93.1.1 35637 2h3hA 313 3.09e-06 2ioyA 283 3.13e-06 3g1wA 305 3.23e-06 2qu7A 288 3.44e-06 2fqxA 318 3.95e-06 2dri 271 4.57e-06 3gbvA 304 4.58e-06 3l6uA 293 5.93e-06 3l49A 291 8.36e-06 1jyeA 349 1.06e-05 c.93.1.1 67455 2vk2A 306 1.46e-05 3d02A 303 1.49e-05 3c6qA 311 1.62e-05 2fn9A 290 1.65e-05 3bilA 348 3.61e-05 3brqA 296 5.99e-05 2fepA 289 6.03e-05 1dbqA 289 6.27e-05 c.93.1.1 35666 1bykA 255 7.32e-05 c.93.1.1 35706 2fvyA 309 7.58e-05 c.93.1.1 134227 3egcA 291 9.52e-05 3hcwA 295 0.000102 3h75A 350 0.000104 3c3kA 285 0.000119 3h5oA 339 0.000124 3hs3A 277 0.000129 2o20A 332 0.000130 8abp 306 0.000135 3ctpA 330 0.000135 1jftA 340 0.000172 a.35.1.5,c.93.1.1 66652,66653 3kjxA 344 0.000176 3k4hA 292 0.000224 3gv0A 288 0.000227 3e3mA 355 0.000252 3jy6A 276 0.000253 2rgyA 290 0.000264 8abpA 306 0.000396 c.93.1.1 35647 3d8uA 275 0.000514 3cs3A 277 0.000647 3k9cA 289 0.000740 3gybA 280 0.000827 2hqbA 296 0.000842 1gca 309 0.001069 3clkA 290 0.001318 3huuA 305 0.001613 3e61A 277 0.001769 3h5tA 366 0.002093 3jvdA 333 0.003756 3kkeA 303 0.004199 3bblA 287 0.006329 3g85A 289 0.006867 2h0aA 276 0.02954 1vljA 407 1.488 e.22.1.2 108832 1rrmA 386 1.589 e.22.1.2 105081 2eq5A 228 3.334 3ce9A 354 4.747 1o2dA 371 6.175 e.22.1.2 86591 2vlbA 251 10.16 3iv7A 364 10.70 3dr3A 337 12.68 1jr2A 286 12.98 c.113.1.1 67111 2p0oA 372 13.00 1ta9A 450 14.74 2ajtA 500 14.94 b.43.2.2,c.85.1.2 126894,126895 1qopA 268 15.26 c.1.2.4 28570 1qh8A 478 16.09 c.92.2.3 35633 1ys7A 233 16.73 a.4.6.1,c.23.1.1 123961,123962 3hl0A 353 18.51 2e0cA 409 18.64 1kgsA 225 18.84 a.4.6.1,c.23.1.1 68596,68597 3lmzA 257 20.42 1fuiA 591 20.46 b.43.2.1,c.85.1.1 25674,35444 2qv7A 337 21.37 e.52.1.2 151386 3ixmA 240 22.07 1mvoA 136 22.73 c.23.1.1 79513 1twdA 256 23.24 c.1.30.1 107397 2q5cA 196 23.46 1kq3A 376 24.08 e.22.1.2 68790 2bw0A 329 24.97 b.46.1.1,c.65.1.1 129303,129304 2yw2A 424 25.29 1pb1A 416 26.58 c.77.1.1 88014 5nllA 138 26.71 c.23.5.1 31198 3dahA 319 28.58 2yrxA 451 29.05 3fzqA 274 30.49 2pl1A 121 32.41 c.23.1.1 149610 2w37A 359 32.66 2yxbA 161 32.74 2zdsA 340 32.79 3fniA 159 32.91 1dv1A 449 34.40 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2plnA 137 35.93 3dc8A 490 36.29 1drwA 273 38.22 c.2.1.3,d.81.1.3 30057,39972 1ymqA 261 39.54 c.108.1.10 123707 1vjrA 271 39.59 c.108.1.14 100832 2z1dA 372 41.12 1xmxA 385 41.15 c.52.1.26 115568 1vmeA 410 41.28 c.23.5.1,d.157.1.3 108893,108894 3erpA 353 42.55 1s3iA 310 43.67 b.46.1.1,c.65.1.1 98435,98436 1oywA 523 43.81 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1yioA 208 44.10 a.4.6.2,c.23.1.1 123326,123327 2f48A 555 44.79 c.89.1.1 132915 1pwhA 327 45.27 c.79.1.1 95224 1jq5A 370 45.65 e.22.1.2 67084 3jr2A 218 46.15 1sr9A 644 46.49 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1h1yA 228 46.76 c.1.2.2 76506 3ixlA 240 47.78 2jfuA 291 49.41 1s8nA 205 49.68 c.23.1.1 105374 1tqhA 247 50.60 c.69.1.29 107225 3iveA 509 51.06 1f2dA 341 51.45 c.79.1.1 35298 2klbA 154 51.56 3cprA 304 52.24 3h16A 154 52.52 2pn1A 331 52.61 3e9kA 465 54.06 1yx1A 264 55.37 c.1.15.7 124169 2pjuA 225 55.89 c.92.3.1 149579 2oqrA 230 57.32 1zl0A 311 57.42 c.8.10.1,c.23.16.7 125231,125232 1j0dA 341 57.62 c.79.1.1 83902 1xi3A 215 57.63 c.1.3.1 109601 2qipA 165 58.01 2dgdA 223 59.44 1b00A 127 59.70 c.23.1.1 31122 2regA 298 59.71 1vhnA 318 60.19 c.1.4.1 100693 2fb2A 340 60.46 2purA 292 61.30 1us5A 314 61.84 c.94.1.1 99856 3dg9A 248 62.68 2dzxA 248 63.09 1kcxA 518 63.67 b.92.1.3,c.1.9.6 90953,90954 3a10A 116 63.76 2wnwA 447 64.69 1u0sY 118 64.70 c.23.1.1 107566 3elbA 341 66.16 1xkyA 301 67.03 c.1.10.1 122094 1w24A 182 67.45 d.159.1.7 120579 3k1aA 491 68.85 1j0aA 325 69.19 c.79.1.1 83871 2bonA 332 69.60 e.52.1.2 146163 3biqA 467 69.75 2gz1A 366 69.79 c.2.1.3,d.81.1.1 135887,135888 1dqsA 393 70.26 e.22.1.1 43347 3dwgA 325 71.30 1jxhA 288 71.68 c.72.1.2 67415 1gsoA 431 71.94 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1pswA 348 71.97 c.87.1.7 88287 1xrsB 262 72.15 c.23.6.1,d.230.4.1 115884,115885 2z5lA 511 72.16 1ly1A 181 72.50 c.37.1.1 74334 1t4bA 367 72.52 c.2.1.3,d.81.1.1 106406,106407 1dbwA 126 73.36 c.23.1.1 31095 2ekcA 262 74.56 1duvG 333 75.28 c.78.1.1,c.78.1.1 35228,35229 2r44A 331 75.39 1rd5A 262 75.60 c.1.2.4 111772 3ju2A 284 77.43 3jteA 143 77.80 1zjjA 263 78.23 2jbaA 127 78.65 1y80A 210 78.92 1ve1A 304 79.08 c.79.1.1 120007 1iowA 306 79.67 c.30.1.2,d.142.1.1 31713,41481 1p5dX 463 80.65 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1ybhA 590 81.42 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1ynuA 473 81.82 c.67.1.4 123762 2z00A 426 81.90 3iipA 256 83.71 2dztA 248 83.84 3lteA 132 84.04 1vd6A 224 84.71 c.1.18.3 119991 1o58A 303 85.05 c.79.1.1 92491 1vliA 385 85.26 b.85.1.1,c.1.10.6 108830,108831 1tv8A 340 85.59 c.1.28.3 107352 1gveA 327 86.41 c.1.7.1 70597 1rrvA 416 87.96 c.87.1.5 105083 1hw6A 278 88.71 c.1.7.1 61296 2ez9A 603 89.20 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629