# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3hutA 358 1.50e-34 3i09A 375 1.71e-34 1usgA 346 2.08e-34 c.93.1.1 99864 1peaA 385 4.91e-34 c.93.1.1 35662 3i45A 387 5.29e-34 1z15A 344 1.12e-33 1pea 385 1.87e-33 3lopA 364 4.42e-33 3lmkA 492 1.10e-31 3lkbA 392 1.60e-31 3ks9A 496 2.42e-31 3h5lA 419 4.05e-31 1ewkA 490 7.88e-31 c.93.1.1 35712 1dp4A 435 1.34e-30 c.93.1.1 35710 3eafA 391 2.23e-30 3h6gA 395 3.29e-29 2e4uA 555 9.10e-29 3ckmA 327 1.73e-27 c.93.1.1 156739 3h5vA 394 1.78e-27 2wjwA 388 1.79e-27 1jdpA 441 1.96e-27 c.93.1.1 62906 3jpwA 363 2.32e-24 2qh8A 302 5.01e-11 3lftA 295 5.54e-10 3lkvA 302 9.62e-10 1jx6A 342 1.19e-09 c.93.1.1 67406 1tjyA 316 5.32e-09 c.93.1.1 107062 1gudA 288 8.72e-09 c.93.1.1 83326 3ejwA 315 2.40e-08 3ksmA 276 3.86e-08 2iksA 293 6.67e-08 2qu7A 288 9.09e-08 3brsA 289 1.04e-07 2qvcA 313 1.44e-07 2rjoA 332 1.66e-07 2vk2A 306 3.53e-07 3l6uA 293 5.50e-07 3d02A 303 5.90e-07 2ioyA 283 6.20e-07 2dri 271 6.67e-07 2fqxA 318 7.38e-07 3l49A 291 7.81e-07 2fn9A 290 8.13e-07 2driA 271 1.23e-06 c.93.1.1 35637 2fvyA 309 1.50e-06 c.93.1.1 134227 3g1wA 305 1.90e-06 2h3hA 313 1.97e-06 3bilA 348 2.34e-06 3h75A 350 2.45e-06 3gbvA 304 2.53e-06 3c6qA 311 2.81e-06 1jyeA 349 4.74e-06 c.93.1.1 67455 1bykA 255 6.27e-06 c.93.1.1 35706 3brqA 296 7.29e-06 3hs3A 277 8.63e-06 3c3kA 285 1.00e-05 1dbqA 289 1.05e-05 c.93.1.1 35666 3ctpA 330 1.82e-05 2fepA 289 1.84e-05 3k4hA 292 2.63e-05 2o20A 332 2.92e-05 3egcA 291 3.22e-05 3hcwA 295 3.52e-05 3h5oA 339 3.81e-05 3jy6A 276 3.83e-05 3d8uA 275 3.93e-05 3kjxA 344 5.74e-05 1jftA 340 7.22e-05 a.35.1.5,c.93.1.1 66652,66653 8abp 306 7.25e-05 3gybA 280 7.82e-05 3e61A 277 7.99e-05 3gv0A 288 8.89e-05 3cs3A 277 9.09e-05 2rgyA 290 0.000112 3k9cA 289 0.000113 8abpA 306 0.000121 c.93.1.1 35647 2hqbA 296 0.000173 3e3mA 355 0.000176 3huuA 305 0.000280 1gca 309 0.000408 3kkeA 303 0.000445 3clkA 290 0.000471 3bblA 287 0.000662 3jvdA 333 0.001388 3g85A 289 0.002301 2h0aA 276 0.004299 3h5tA 366 0.008044 2eq5A 228 1.426 1rrmA 386 1.705 e.22.1.2 105081 1vljA 407 3.891 e.22.1.2 108832 2vlbA 251 3.958 3dr3A 337 4.615 1o2dA 371 5.350 e.22.1.2 86591 1drwA 273 5.761 c.2.1.3,d.81.1.3 30057,39972 1fuiA 591 6.444 b.43.2.1,c.85.1.1 25674,35444 1pb1A 416 6.810 c.77.1.1 88014 3hl0A 353 7.021 1jq5A 370 10.04 e.22.1.2 67084 3fzqA 274 11.88 1dqsA 393 12.26 e.22.1.1 43347 1us5A 314 12.40 c.94.1.1 99856 3iv7A 364 14.11 2yrxA 451 15.85 2e0cA 409 17.40 3ce9A 354 17.77 1kq3A 376 19.38 e.22.1.2 68790 3lmzA 257 21.68 1hqsA 423 22.12 c.77.1.1 61154 2gz1A 366 22.26 c.2.1.3,d.81.1.1 135887,135888 3ixmA 240 23.10 1lt8A 406 24.19 c.1.26.1 78186 2ajtA 500 24.28 b.43.2.2,c.85.1.2 126894,126895 2dgdA 223 25.47 2rhwA 283 26.32 c.69.1.10 152053 1tyoA 435 27.12 3flkA 364 27.37 2regA 298 27.49 2yw2A 424 28.18 1owlA 484 28.56 a.99.1.1,c.28.1.1 93647,93648 1ymqA 261 29.81 c.108.1.10 123707 1a8sA 273 32.09 c.69.1.12 34710 1nhpA 447 32.82 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1ta9A 450 33.66 1b00A 127 33.80 c.23.1.1 31122 1tqhA 247 36.41 c.69.1.29 107225 3elbA 341 36.56 2zbwA 335 37.15 2z1dA 372 37.87 2q5cA 196 37.97 1xrsB 262 38.80 c.23.6.1,d.230.4.1 115884,115885 1tca 317 38.87 1b74A 254 38.96 c.78.2.1,c.78.2.1 35264,35265 1vimA 200 39.06 c.80.1.3 100758 3istA 269 39.55 2d1cA 496 39.59 2cjpA 328 39.74 2bw0A 329 40.01 b.46.1.1,c.65.1.1 129303,129304 1mvoA 136 40.88 c.23.1.1 79513 2p0oA 372 41.52 1jxhA 288 42.91 c.72.1.2 67415 2dkaA 544 44.74 1ys7A 233 45.13 a.4.6.1,c.23.1.1 123961,123962 3ixlA 240 45.84 2pl5A 366 46.69 c.69.1.40 149611 1c0pA 363 46.71 c.4.1.2,d.16.1.3 30647,37934 1u94A 356 47.36 c.37.1.11,d.48.1.1 107743,107744 1vhnA 318 48.60 c.1.4.1 100693 1rkqA 282 50.44 c.108.1.10 97621 1p9lA 245 51.04 c.2.1.3,d.81.1.3 94393,94394 1t4bA 367 51.32 c.2.1.3,d.81.1.1 106406,106407 2zxtA 465 51.44 1gkuB 1054 51.80 c.37.1.16,c.37.1.16,e.10.1.1 65257,65258,65259 3k5iA 403 52.25 2fl4A 149 52.77 d.108.1.1 133706 2pl1A 121 53.80 c.23.1.1 149610 1dbwA 126 54.60 c.23.1.1 31095 1s8nA 205 54.99 c.23.1.1 105374 3ewwA 260 55.40 1m3sA 186 55.95 c.80.1.3 78573 2rinA 298 56.54 2ozpA 345 57.12 3h4zA 568 57.96 2qs9A 194 58.84 1gsoA 431 59.86 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1iukA 140 60.57 c.2.1.8 83712 1brtA 277 60.91 c.69.1.12 34699 1twdA 256 61.57 c.1.30.1 107397 2oqrA 230 61.95 2yxbA 161 61.97 1dv1A 449 62.33 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1ly1A 181 62.84 c.37.1.1 74334 1pwhA 327 63.34 c.79.1.1 95224 1j0aA 325 63.61 c.79.1.1 83871 1kgsA 225 64.10 a.4.6.1,c.23.1.1 68596,68597 1xadA 345 64.19 c.77.1.1 35055 1trbA 320 64.30 c.3.1.5,c.3.1.5 30529,30530 3lvuA 258 66.68 2gruA 368 67.24 2jbaA 127 67.46 2b3fA 400 67.53 1jeoA 180 67.70 c.80.1.3 66611 1w24A 182 69.24 d.159.1.7 120579 1jr2A 286 69.43 c.113.1.1 67111 3lteA 132 70.20 1vi9A 299 70.46 c.72.1.5 100750 3dahA 319 70.71 1b6gA 310 71.96 c.69.1.8 34661 3h25A 226 72.69 1yioA 208 74.92 a.4.6.2,c.23.1.1 123326,123327 1r9lA 309 75.03 c.94.1.1 97262 1u2eA 289 75.05 1x0lA 333 76.13 3giwA 277 76.21 2dwcA 433 77.84 2r44A 331 77.94 3a10A 116 80.30 3clhA 343 82.13 3gd3A 535 82.39 3cnyA 301 82.48 1brt 277 83.66 3fniA 159 83.71 1a8qA 274 83.95 c.69.1.12 34702 2d59A 144 84.88 c.2.1.8 131266 2g17A 337 85.30 c.2.1.3,d.81.1.1 134512,134513 1kyqA 274 85.81 c.2.1.11,e.37.1.1 73281,73282 3hlyA 161 86.77 1qh8A 478 87.39 c.92.2.3 35633 3icvA 316 87.39 3h74A 282 87.76 1sxjA 511 88.11 a.80.1.1,c.37.1.20 106081,106082 3dc8A 490 88.13 2wnwA 447 88.93 2ep5A 350 89.96