# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3hutA 358 1.63e-26 3i09A 375 2.69e-26 1usgA 346 6.33e-26 c.93.1.1 99864 3i45A 387 7.97e-26 1peaA 385 3.00e-25 c.93.1.1 35662 3lopA 364 3.01e-25 1z15A 344 4.05e-25 1pea 385 6.51e-25 3lkbA 392 4.64e-24 3h5lA 419 4.94e-24 1dp4A 435 2.16e-23 c.93.1.1 35710 3lmkA 492 3.00e-23 3ks9A 496 6.34e-23 3eafA 391 1.31e-22 1ewkA 490 1.38e-22 c.93.1.1 35712 3h6gA 395 6.55e-22 2e4uA 555 6.99e-22 2wjwA 388 5.09e-21 3h5vA 394 6.36e-21 1jdpA 441 4.22e-20 c.93.1.1 62906 3ckmA 327 5.96e-20 c.93.1.1 156739 3jpwA 363 1.76e-18 2qh8A 302 1.13e-08 1jx6A 342 1.05e-07 c.93.1.1 67406 3lftA 295 1.92e-07 3lkvA 302 2.17e-07 3ejwA 315 2.82e-07 1tjyA 316 7.93e-07 c.93.1.1 107062 3brsA 289 1.68e-06 3ksmA 276 1.95e-06 2h3hA 313 2.28e-06 2ioyA 283 2.37e-06 2rjoA 332 2.54e-06 2qu7A 288 2.66e-06 2qvcA 313 3.51e-06 2dri 271 3.63e-06 2driA 271 3.66e-06 c.93.1.1 35637 3l49A 291 4.67e-06 2iksA 293 6.42e-06 3l6uA 293 6.58e-06 2vk2A 306 7.04e-06 3d02A 303 7.53e-06 2fqxA 318 8.47e-06 1gudA 288 8.49e-06 c.93.1.1 83326 2fvyA 309 1.60e-05 c.93.1.1 134227 2fn9A 290 1.81e-05 3g1wA 305 3.37e-05 3c6qA 311 3.58e-05 1jyeA 349 3.77e-05 c.93.1.1 67455 3h75A 350 4.39e-05 3hs3A 277 5.44e-05 3c3kA 285 5.96e-05 3h5oA 339 7.41e-05 8abp 306 7.83e-05 3gbvA 304 8.05e-05 3ctpA 330 8.08e-05 2fepA 289 8.46e-05 3brqA 296 0.000100 3k4hA 292 0.000111 1dbqA 289 0.000128 c.93.1.1 35666 8abpA 306 0.000139 c.93.1.1 35647 3bilA 348 0.000150 2o20A 332 0.000154 3kjxA 344 0.000192 3egcA 291 0.000255 1bykA 255 0.000259 c.93.1.1 35706 2hqbA 296 0.000268 3e3mA 355 0.000271 3hcwA 295 0.000294 1gca 309 0.000309 3gybA 280 0.000329 3jy6A 276 0.000476 3d8uA 275 0.000506 3gv0A 288 0.000519 3huuA 305 0.000752 3e61A 277 0.000880 3cs3A 277 0.000891 2rgyA 290 0.001014 1jftA 340 0.001030 a.35.1.5,c.93.1.1 66652,66653 3k9cA 289 0.001156 3kkeA 303 0.001349 3clkA 290 0.001625 3h5tA 366 0.002583 3bblA 287 0.004206 2h0aA 276 0.006469 3g85A 289 0.006985 3jvdA 333 0.01035 2eq5A 228 1.042 2vlbA 251 3.400 3ixmA 240 4.707 1pb1A 416 4.935 c.77.1.1 88014 1us5A 314 4.989 c.94.1.1 99856 3fzqA 274 7.727 1udcA 338 10.21 c.2.1.2 29785 3dg9A 248 10.76 1kcxA 518 11.26 b.92.1.3,c.1.9.6 90953,90954 2pqmA 343 11.74 3elbA 341 12.06 1vljA 407 12.75 e.22.1.2 108832 1o58A 303 13.16 c.79.1.1 92491 3dr3A 337 14.52 1rrmA 386 14.98 e.22.1.2 105081 1fuiA 591 14.99 b.43.2.1,c.85.1.1 25674,35444 2d1cA 496 16.04 2r6jA 318 17.24 3ixlA 240 17.62 1zl0A 311 18.07 c.8.10.1,c.23.16.7 125231,125232 1twdA 256 18.20 c.1.30.1 107397 2q5cA 196 18.45 1vl0A 292 21.10 c.2.1.2 108704 2dwuA 276 21.32 2w70A 449 22.90 2dgdA 223 23.60 3dwgA 325 24.38 1zuwA 272 24.38 2q3bA 313 24.48 1ycdA 243 24.62 3istA 269 26.00 2gzmA 267 26.52 2vvtA 290 27.10 3i6iA 346 27.13 1o2dA 371 27.46 e.22.1.2 86591 3dahA 319 27.72 1hqsA 423 27.94 c.77.1.1 61154 1nhpA 447 28.28 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2qs9A 194 28.38 2o4cA 380 28.43 2yxbA 161 28.67 2v03A 303 28.85 3f8dA 323 28.89 1ve1A 304 29.17 c.79.1.1 120007 1jq5A 370 29.27 e.22.1.2 67084 2jfuA 291 29.99 1dqsA 393 30.26 e.22.1.1 43347 1owlA 484 31.52 a.99.1.1,c.28.1.1 93647,93648 1gsoA 431 31.72 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 3kb6A 334 32.35 1j0aA 325 32.53 c.79.1.1 83871 1u2eA 289 33.60 1b74A 254 33.89 c.78.2.1,c.78.2.1 35264,35265 2r00A 336 34.12 1dv1A 449 34.24 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 3hl0A 353 34.36 1duvG 333 37.80 c.78.1.1,c.78.1.1 35228,35229 2cduA 452 38.54 3h16A 154 38.67 1vjrA 271 39.52 c.108.1.14 100832 1pwhA 327 40.17 c.79.1.1 95224 3en0A 291 40.40 2g29A 417 40.48 3dmsA 427 40.58 1vhwA 253 40.99 c.56.2.1 100706 1lt8A 406 41.21 c.1.26.1 78186 1mvoA 136 41.58 c.23.1.1 79513 3enkA 341 43.28 3e8xA 236 43.49 3irsA 291 44.58 1ygyA 529 44.62 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1hslA 238 44.66 c.94.1.1 35804 2ac7A 235 44.84 c.56.2.1 126543 2wm3A 299 44.93 2qt3A 403 45.03 1y56B 382 45.08 2qruA 274 45.55 1y7lA 316 45.64 c.79.1.1 122695 2rhwA 283 46.75 c.69.1.10 152053 3ij6A 312 47.21 1kq3A 376 47.77 e.22.1.2 68790 1hyuA 521 48.42 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2e0cA 409 49.01 1xmxA 385 49.60 c.52.1.26 115568 1p5jA 372 49.67 c.79.1.1 104067 3ef6A 410 50.70 1dbwA 126 51.24 c.23.1.1 31095 1tqhA 247 51.38 c.69.1.29 107225 3f6rA 148 51.96 1dxyA 333 52.31 c.2.1.4,c.23.12.1 30094,31354 2p4hX 322 52.46 3l6bA 346 52.47 1t4bA 367 53.64 c.2.1.3,d.81.1.1 106406,106407 2jgdA 933 54.53 2z1dA 372 54.89 2gz1A 366 54.92 c.2.1.3,d.81.1.1 135887,135888 1xadA 345 57.62 c.77.1.1 35055 3gpiA 286 57.78 1ru8A 232 57.92 c.26.2.1 97849 3a10A 116 57.99 3g8cA 444 59.42 3f5dA 206 59.75 2hcrA 326 60.58 3b46A 447 60.81 1ys4A 354 60.86 1odkA 235 61.21 c.56.2.1 86863 1xrtA 467 62.04 b.92.1.3,c.1.9.6 122258,122259 1djuA 388 62.08 c.67.1.1 59116 1jr2A 286 62.40 c.113.1.1 67111 2c2bA 486 63.34 1t2aA 375 63.64 c.2.1.2 99078 1zd3A 555 64.76 c.108.1.2,c.69.1.11 124930,124931 2jbaA 127 65.67 2uz0A 263 67.12 1nhsA 447 67.47 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1tyoA 435 68.46 2vvrA 149 68.75 3glqA 494 68.81 1m7yA 435 69.57 c.67.1.4 78761 3d1cA 369 69.63 1kgsA 225 69.72 a.4.6.1,c.23.1.1 68596,68597 3dtvA 240 70.39 3lteA 132 70.55 2gasA 307 70.69 3iv7A 364 71.40 3ce9A 354 72.15 1dxy 333 72.71 1np7A 489 72.83 a.99.1.1,c.28.1.1 80677,80678 2qjwA 176 73.17 3hxkA 276 73.93 3ba1A 333 74.41 3fseA 365 74.80 3dc8A 490 74.94 2ddmA 283 75.98 3c9fA 557 76.10 d.114.1.1,d.159.1.2 156125,156126 2wq7A 543 76.34 2gkgA 127 76.91 1x0lA 333 76.95 2pl1A 121 78.52 c.23.1.1 149610 1j0dA 341 79.94 c.79.1.1 83902 1pjcA 361 80.61 c.2.1.4,c.23.12.2 30101,31361 3ecsA 315 81.18 2dwcA 433 81.52 1yqzA 438 81.61 2pi1A 334 81.99 1cjcA 460 82.14 c.3.1.1,c.4.1.1 30319,30604 2zsjA 352 82.45 1sb8A 352 82.80 c.2.1.2 105410 2yy7A 312 83.49 3cvuA 543 83.65 3c1oA 321 83.66 3fniA 159 83.92 1y80A 210 84.34 2gn0A 342 84.57 2z1mA 345 84.60 3flkA 364 84.94 1ek6A 348 85.23 c.2.1.2 29800 3kapA 147 85.61 1m6iA 493 86.50 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2regA 298 86.97 3labA 217 87.17 2w37A 359 89.21 2veoA 441 89.67 1tmyA 120 89.88 c.23.1.1 31083