# List of top-scoring protein chains for T0528.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i09A	375	3.30e-26		
2lbpA	346	2.18e-23	c.93.1.1	35709
1usgA	346	2.25e-23	c.93.1.1	99864
1z15A	344	4.51e-22		
3i45A	387	5.36e-22		
2livA	344	7.79e-22	c.93.1.1	35708
1peaA	385	3.15e-21	c.93.1.1	35662
1qnlA	385	3.24e-21	c.93.1.1	35665
3hutA	358	1.46e-20		
3h5lA	419	2.65e-13		
3lopA	364	2.26e-11		
3lkbA	392	7.89e-11		
3eafA	391	2.51e-10		
3lmkA	492	1.95e-06		
3ks9A	496	2.47e-06		
1ewkA	490	3.53e-06	c.93.1.1	35712
2e4zA	501	1.05e-05		
2e4uA	555	4.61e-05		
3h6gA	395	0.000883		
1dp4A	435	0.003453	c.93.1.1	35710
1yk0A	480	0.005174		
1yk1A	479	0.005181		
1jdpA	441	0.006070	c.93.1.1	62906
2ioyA	283	0.1065		
3kg2A	823	0.2106		
3h5vA	394	0.2160		
2wjwA	388	0.2173		
1ba2A	271	0.2373	c.93.1.1	35640
2driA	271	0.2699	c.93.1.1	35637
1drjA	271	0.2726	c.93.1.1	35642
1dbpA	271	0.3097	c.93.1.1	35639
1drkA	271	0.3569	c.93.1.1	35638
2gx6A	278	0.3585		
3lkvA	302	1.163		
3ckmA	327	3.320	c.93.1.1	156739
2vk2A	306	5.449		
3e3mA	355	11.23		
3l49A	291	12.09		
2h3hA	313	22.58		
3e70C	328	22.93		
1q50A	561	24.03	c.80.1.2	104535
2qvcA	313	24.22		
3c6qA	311	26.87		
1t10A	605	29.78	c.80.1.2	106235
1qvzA	237	42.28	c.23.16.2	96453
1pfkA	320	47.79	c.89.1.1	35575
1spaA	396	48.10	c.67.1.1	34291
3gayA	323	49.00		
3kjxA	344	49.62		
3gtnA	401	49.74		
1qvvA	237	50.09	c.23.16.2	96442
1rw7A	243	50.56	c.23.16.2	97963
1n7kA	234	56.80	c.1.10.1	85374
2aatA	396	57.47	c.67.1.1	34348
3lftA	295	58.44		
1qirA	396	59.22	c.67.1.1	34290
2v9dA	343	61.45		
1arhA	396	62.13	c.67.1.1	34321
1qitA	396	63.22	c.67.1.1	34286
1tokA	396	67.88	c.67.1.1	112602
3gb6A	323	68.22		
1fa2A	498	69.59	c.1.8.1	28797
1czaN	917	70.38	c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3	33463,33464,33465,33466
1togA	396	72.25	c.67.1.1	112598
2qdsA	227	74.49	d.157.1.1	150672
1z69A	327	74.84		
1asgA	396	74.86	c.67.1.1	34335
1p4sA	181	76.48	c.37.1.1	94117
2fn9A	290	77.68		
3l6uA	293	80.68		
2q7wA	396	81.14	c.67.1.1	150105
1aiaA	396	81.82	c.67.1.1	34306
1qisA	396	81.99	c.67.1.1	34284
3labA	217	82.74		
2cdnA	201	82.88	c.37.1.1	130289
3ejwA	315	82.90		
2j87A	177	84.34		
1arsA	396	87.37	c.67.1.1	34287
3aatA	396	87.72	c.67.1.1	34346