# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i09A 375 5.73e-34 3hutA 358 6.17e-33 3i45A 387 8.00e-33 1peaA 385 1.81e-30 c.93.1.1 35662 3h5lA 419 3.70e-30 3lkbA 392 5.61e-30 3lopA 364 5.91e-30 1usgA 346 5.62e-29 c.93.1.1 99864 2liv 344 1.41e-28 1z15A 344 1.42e-28 3eafA 391 3.52e-28 1pea 385 6.75e-28 3ckmA 327 8.67e-24 c.93.1.1 156739 1dp4A 435 6.64e-23 c.93.1.1 35710 1jdpA 441 4.62e-22 c.93.1.1 62906 2e4uA 555 2.13e-21 1ewkA 490 1.32e-20 c.93.1.1 35712 3lmkA 492 5.88e-19 3ks9A 496 1.53e-17 2wjwA 388 8.04e-17 3h5vA 394 1.06e-16 3h6gA 395 1.58e-15 3jpwA 363 2.51e-10 1jx6A 342 1.90e-05 c.93.1.1 67406 3lkvA 302 0.000381 1tlfA 301 0.000641 c.93.1.1 35687 2qh8A 302 0.002425 3ksmA 276 0.005355 1jyeA 349 0.007844 c.93.1.1 67455 2dri 271 0.01091 3lftA 295 0.01299 3l49A 291 0.01446 3gbvA 304 0.01593 1bykA 255 0.01637 c.93.1.1 35706 1dbqA 289 0.01689 c.93.1.1 35666 2vk2A 306 0.02592 3g1wA 305 0.03562 8abpA 306 0.04818 c.93.1.1 35647 1gudA 288 0.05155 c.93.1.1 83326 3l6uA 293 0.05158 3c6qA 311 0.06331 1tjyA 316 0.07006 c.93.1.1 107062 2rjoA 332 0.07278 2qvcA 313 0.07928 3h75A 350 0.09377 1gca 309 0.1117 8abp 306 0.1309 3ejwA 315 0.1444 2o20A 332 0.1614 3d02A 303 0.2002 2driA 271 0.2274 c.93.1.1 35637 2h3hA 313 0.2362 1jftA 340 0.2534 a.35.1.5,c.93.1.1 66652,66653 2fepA 289 0.5705 2fqxA 318 0.8598 2rgyA 290 0.8664 3h5oA 339 1.139 2fvyA 309 1.290 c.93.1.1 134227 3brqA 296 2.083 3brsA 289 2.378 2qu7A 288 3.634 2hqbA 296 3.653 3bilA 348 3.737 1rrmA 386 3.815 e.22.1.2 105081 3bblA 287 4.000 1n7kA 234 4.925 c.1.10.1 85374 3hcwA 295 5.017 3gv0A 288 5.048 3a9sA 595 5.621 2iksA 293 6.557 3k4hA 292 8.370 3hs3A 277 9.516 1reqA 727 10.02 c.1.19.1,c.23.6.1 29620,31247 2ho4A 259 10.53 3c3kA 285 10.57 1zin 217 11.07 3kl4A 433 11.57 3jy6A 276 11.66 3huuA 305 11.86 1dkuA 317 15.89 c.61.1.2,c.61.1.2 34118,34119 1ru8A 232 16.31 c.26.2.1 97849 2i2xB 258 16.34 2ioyA 283 17.24 1j8yF 297 17.70 a.24.13.1,c.37.1.10 62747,62748 2rfgA 297 19.33 2ac7A 235 21.19 c.56.2.1 126543 3ixlA 240 22.43 3daqA 292 22.43 3gybA 280 22.65 1uiuA 502 22.93 c.94.1.1 99434 1vmeA 410 22.96 c.23.5.1,d.157.1.3 108893,108894 1s3iA 310 23.57 b.46.1.1,c.65.1.1 98435,98436 3labA 217 23.96 1euaA 213 24.34 c.1.10.1 29155 1u9yA 284 24.49 c.61.1.2,c.61.1.2 119655,119656 3ctpA 330 25.12 2fn9A 290 25.27 2pjuA 225 26.05 c.92.3.1 149579 3ju3A 118 26.47 3d8uA 275 27.32 1vc4A 254 28.10 c.1.2.4 100557 1f74A 293 29.10 c.1.10.1 29079 1tqjA 230 30.01 c.1.2.2 107228 3g85A 289 30.06 3egcA 291 31.16 1jq5A 370 31.62 e.22.1.2 67084 3fwzA 140 31.84 2q5cA 196 32.11 3lerA 301 33.08 2vvpA 162 34.02 c.121.1.1 153645 3kkeA 303 34.87 1l1qA 186 34.96 c.61.1.1 77653 2gkpA 167 35.07 d.351.1.1 147129 3i1jA 247 35.25 3ho1A 685 35.31 3kjxA 344 35.92 1vchA 175 36.15 c.61.1.1 119980 1rpxA 230 36.72 c.1.2.2 28536 2yxbA 161 37.35 1o08A 221 38.26 c.108.1.6 86525 1u7pA 164 38.34 c.108.1.17 113095 3he8A 149 38.41 1xkyA 301 38.49 c.1.10.1 122094 1zlqA 502 40.57 c.94.1.1 125253 2fliA 220 40.57 c.1.2.2 133714 3e3mA 355 40.58 1vjrA 271 40.87 c.108.1.14 100832 1hslA 238 41.67 c.94.1.1 35804 2ojpA 292 44.62 1y0bA 197 44.76 c.61.1.1 122476 1dhpA 292 44.93 c.1.10.1 29097 1yx1A 264 45.65 c.1.15.7 124169 1rd5A 262 45.91 c.1.2.4 111772 3k9cA 289 45.99 2ae2A 260 46.49 c.2.1.2 29945 2a6nA 292 48.34 c.1.10.1 126289 1s8nA 205 48.72 c.23.1.1 105374 3cs3A 277 48.93 2blnA 305 49.58 b.46.1.1,c.65.1.1 128734,128735 2c4nA 250 50.28 c.108.1.14 129837 1o0yA 260 50.60 c.1.10.1 80756 1fmtA 314 50.91 b.46.1.1,c.65.1.1 25758,34174 3lb0A 276 52.79 2vvrA 149 53.48 3llvA 141 54.62 1jbwA 428 54.74 c.59.1.2,c.72.2.2 62860,62861 5reqA 727 54.77 c.1.19.1,c.23.6.1 29632,31259 2purA 292 54.83 1j0aA 325 54.91 c.79.1.1 83871 1kgsA 225 55.02 a.4.6.1,c.23.1.1 68596,68597 2ehhA 294 55.81 2dy0A 190 55.95 1a7j 290 55.96 3m7wA 255 56.25 3fcpA 381 56.26 1o1xA 155 56.53 c.121.1.1 86553 1wpgA 994 58.82 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 1owlA 484 59.17 a.99.1.1,c.28.1.1 93647,93648 1lssA 140 59.74 c.2.1.9 74246 2z1nA 260 59.98 1np7A 489 60.16 a.99.1.1,c.28.1.1 80677,80678 3lteA 132 60.29 3fluA 297 60.39 1bmtA 246 60.55 a.46.1.1,c.23.6.1 17757,31235 1o5kA 306 61.06 c.1.10.1 92504 1g2qA 187 61.28 c.61.1.1 65117 3l6eA 235 61.46 3fucA 284 61.55 1v1rA 400 62.55 c.36.1.11 108272 1wbhA 214 62.91 c.1.10.1 120845 2a6lA 292 62.93 c.1.10.1 126285 2zcuA 286 63.07 3h7aA 252 63.94 1u3dA 509 64.20 a.99.1.1,c.28.1.1 107638,107639 1ys7A 233 64.93 a.4.6.1,c.23.1.1 123961,123962 1vlwA 217 66.49 c.1.10.1 108868 3jvdA 333 67.00 1yb1A 272 69.78 c.2.1.2 116599 1b5tA 275 69.90 c.1.23.1 29676 3e70C 328 71.33 3clkA 290 71.36 1p5dX 463 71.44 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2jahA 247 71.91 3iebA 218 72.38 1ojxA 263 72.42 c.1.10.1 93164 1akyA 220 72.67 c.37.1.1,g.41.2.1 31896,45197 2hf9A 226 72.83 3glcA 295 73.28 1y80A 210 73.34 1fcjA 322 73.46 c.79.1.1 35289 3cinA 394 73.53 1u0sY 118 73.98 c.23.1.1 107566 2ohhA 404 74.12 2qulA 290 74.89 1wviA 257 75.11 c.108.1.14 114915 2fr1A 486 75.56 c.2.1.2,c.2.1.2 133961,133962 2vc6A 292 76.58 1ve1A 304 76.62 c.79.1.1 120007 2bdqA 224 76.78 1bif 469 79.51 1g0oA 283 79.67 c.2.1.2 60181 2w37A 359 79.87 2ekcA 262 80.76 1k2yX 463 82.27 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2aeeA 211 83.09 c.61.1.1 126620 1vl0A 292 83.69 c.2.1.2 108704 1ja9A 274 84.08 c.2.1.2 62817 3gd4A 511 85.10 1b8oA 284 85.33 c.56.2.1 33762 1vdmA 153 85.37 c.61.1.1 119994 3hh8A 294 85.47 1v71A 323 86.34 c.79.1.1 119859 1gcoA 261 86.62 c.2.1.2 29884 1geeA 261 86.62 c.2.1.2 90509 1uslA 170 89.02 c.121.1.1 99871 1vljA 407 89.05 e.22.1.2 108832 2pzmA 330 89.05 1vl8A 267 89.53 c.2.1.2 108733