# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i09A 375 1.22e-36 3i45A 387 6.01e-36 3hutA 358 7.35e-36 1peaA 385 1.13e-33 c.93.1.1 35662 3h5lA 419 5.30e-33 3lopA 364 1.06e-32 3lkbA 392 1.97e-32 1usgA 346 1.04e-31 c.93.1.1 99864 1z15A 344 3.04e-31 2liv 344 3.60e-31 3eafA 391 8.64e-31 1pea 385 1.51e-30 3ckmA 327 3.17e-26 c.93.1.1 156739 1dp4A 435 5.93e-25 c.93.1.1 35710 1jdpA 441 1.35e-24 c.93.1.1 62906 2e4uA 555 2.51e-23 1ewkA 490 3.16e-23 c.93.1.1 35712 3lmkA 492 6.73e-21 3ks9A 496 6.41e-20 2wjwA 388 1.92e-18 3h5vA 394 3.85e-18 3h6gA 395 1.51e-16 3jpwA 363 7.20e-11 1jx6A 342 8.61e-06 c.93.1.1 67406 3lkvA 302 7.72e-05 1tlfA 301 0.000881 c.93.1.1 35687 3lftA 295 0.001315 3ksmA 276 0.001486 2qh8A 302 0.003305 3l49A 291 0.004620 2dri 271 0.005681 1jyeA 349 0.006703 c.93.1.1 67455 2vk2A 306 0.01260 3g1wA 305 0.01537 1bykA 255 0.01767 c.93.1.1 35706 3l6uA 293 0.01959 3gbvA 304 0.02019 1dbqA 289 0.02069 c.93.1.1 35666 2rjoA 332 0.02359 1gudA 288 0.04265 c.93.1.1 83326 3c6qA 311 0.05695 2qvcA 313 0.05766 3ejwA 315 0.06467 1tjyA 316 0.06699 c.93.1.1 107062 8abp 306 0.07548 3h75A 350 0.07817 8abpA 306 0.08608 c.93.1.1 35647 3d02A 303 0.1200 1jftA 340 0.1444 a.35.1.5,c.93.1.1 66652,66653 2driA 271 0.2394 c.93.1.1 35637 2fepA 289 0.5207 2hqbA 296 0.5879 1gca 309 0.6107 2fqxA 318 0.6665 2rgyA 290 0.8562 2o20A 332 0.8910 2h3hA 313 1.029 3brqA 296 1.639 2iksA 293 3.559 3h5oA 339 3.628 3brsA 289 4.777 2qu7A 288 5.420 3a9sA 595 5.665 2pjuA 225 6.873 c.92.3.1 149579 1dkuA 317 7.015 c.61.1.2,c.61.1.2 34118,34119 3bilA 348 8.784 2rfgA 297 8.962 1xkyA 301 10.62 c.1.10.1 122094 3gv0A 288 11.29 1rrmA 386 11.38 e.22.1.2 105081 2fvyA 309 11.88 c.93.1.1 134227 3bblA 287 12.40 3lerA 301 13.29 1n7kA 234 14.42 c.1.10.1 85374 3l6eA 235 15.09 3ixlA 240 15.44 2ioyA 283 15.60 3hs3A 277 15.67 1f74A 293 16.17 c.1.10.1 29079 1s3iA 310 18.19 b.46.1.1,c.65.1.1 98435,98436 1zin 217 18.22 1yb1A 272 18.85 c.2.1.2 116599 1uiuA 502 18.95 c.94.1.1 99434 3k4hA 292 19.14 1dhpA 292 19.40 c.1.10.1 29097 1reqA 727 19.82 c.1.19.1,c.23.6.1 29620,31247 1l1qA 186 21.08 c.61.1.1 77653 1vchA 175 21.13 c.61.1.1 119980 3huuA 305 21.27 3c3kA 285 21.44 2qulA 290 22.41 3hcwA 295 23.30 1vc4A 254 23.69 c.1.2.4 100557 2ehhA 294 24.05 3egcA 291 24.20 1vmeA 410 24.58 c.23.5.1,d.157.1.3 108893,108894 1fcjA 322 25.74 c.79.1.1 35289 3a24A 641 26.00 2eq5A 228 26.21 1p0kA 349 26.89 c.1.4.1 87648 1o08A 221 28.40 c.108.1.6 86525 2ojpA 292 28.46 3fluA 297 28.59 2purA 292 29.12 1o0yA 260 29.33 c.1.10.1 80756 1o5kA 306 29.52 c.1.10.1 92504 1j8yF 297 29.92 a.24.13.1,c.37.1.10 62747,62748 2q5cA 196 30.00 2a6nA 292 31.29 c.1.10.1 126289 2blnA 305 31.67 b.46.1.1,c.65.1.1 128734,128735 2a6lA 292 31.75 c.1.10.1 126285 3daqA 292 32.16 3gybA 280 32.61 2vvpA 162 32.98 c.121.1.1 153645 1cb0A 283 34.29 c.56.2.1 33790 1u9yA 284 34.44 c.61.1.2,c.61.1.2 119655,119656 3i1jA 247 35.45 2fn9A 290 35.56 3bleA 337 35.90 3e3mA 355 36.10 2ac7A 235 36.12 c.56.2.1 126543 2yxbA 161 37.20 1ve1A 304 38.47 c.79.1.1 120007 3kjxA 344 38.96 1bmtA 246 39.82 a.46.1.1,c.23.6.1 17757,31235 1a7j 290 39.95 3loqA 294 39.95 2i2xB 258 41.00 3g85A 289 43.11 1v1rA 400 43.56 c.36.1.11 108272 3jy6A 276 44.88 1euaA 213 45.20 c.1.10.1 29155 3eb2A 300 45.29 2z1nA 260 45.96 3h7aA 252 46.17 2vc6A 292 47.69 2zatA 260 48.36 3ho1A 685 48.38 1y7lA 316 50.29 c.79.1.1 122695 1z7wA 322 50.68 c.79.1.1 124674 3fcpA 381 51.04 3ju3A 118 51.37 3cprA 304 51.92 2jahA 247 52.02 3fwzA 140 53.40 1s8nA 205 54.08 c.23.1.1 105374 2p91A 285 54.14 1j0aA 325 54.68 c.79.1.1 83871 1igs 248 55.31 1fmtA 314 55.36 b.46.1.1,c.65.1.1 25758,34174 2bw0A 329 55.57 b.46.1.1,c.65.1.1 129303,129304 1jq5A 370 56.06 e.22.1.2 67084 3ctpA 330 56.46 2ae2A 260 56.97 c.2.1.2 29945 2ho4A 259 57.44 3g49A 277 58.25 1u7pA 164 58.39 c.108.1.17 113095 1w3iA 293 58.67 c.1.10.1 109152 1vr5A 547 58.82 c.94.1.1 120437 1ys7A 233 58.89 a.4.6.1,c.23.1.1 123961,123962 3labA 217 62.02 3dtvA 240 62.59 3he8A 149 62.62 1w85A 368 65.44 c.36.1.11 114335 1a53 247 65.62 1kq3A 376 66.01 e.22.1.2 68790 1uslA 170 66.87 c.121.1.1 99871 1zlqA 502 67.17 c.94.1.1 125253 3lylA 247 69.70 1b5tA 275 70.07 c.1.23.1 29676 1j0dA 341 70.34 c.79.1.1 83902 1owlA 484 71.54 a.99.1.1,c.28.1.1 93647,93648 1vhnA 318 72.47 c.1.4.1 100693 5nul 138 73.54 1u3dA 509 74.06 a.99.1.1,c.28.1.1 107638,107639 2v9dA 343 74.09 1geeA 261 75.50 c.2.1.2 90509 1id1A 153 76.13 c.2.1.9 62286 3ca8A 266 76.71 2wqpA 349 77.45 1x7gA 261 77.89 c.2.1.2 114929 2d59A 144 78.39 c.2.1.8 131266 1gcoA 261 78.49 c.2.1.2 29884 1ru8A 232 78.52 c.26.2.1 97849 3lteA 132 78.74 2hrdA 253 79.21 1lssA 140 80.48 c.2.1.9 74246 2r8wA 332 81.40 2hf9A 226 81.55 1dorA 311 81.88 c.1.4.1 28595 1ja9A 274 82.32 c.2.1.2 62817 1dtwB 342 83.10 c.36.1.7,c.48.1.2 31828,33102 2c07A 285 83.23 c.2.1.2 129577 3k9cA 289 83.53 2v82A 212 84.27 3d8uA 275 84.52 3dg9A 248 84.68 3hdgA 137 85.21 1jbwA 428 86.72 c.59.1.2,c.72.2.2 62860,62861 2gkpA 167 87.74 d.351.1.1 147129 1gegA 256 87.83 c.2.1.2 29888 2p0oA 372 87.97 1u0sY 118 88.30 c.23.1.1 107566 3lb0A 276 89.54 2aeeA 211 89.92 c.61.1.1 126620