# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i09A 375 8.30e-38 3i45A 387 4.48e-37 3hutA 358 5.98e-37 1peaA 385 1.49e-34 c.93.1.1 35662 3h5lA 419 8.38e-34 3lopA 364 1.02e-33 3lkbA 392 1.36e-33 1usgA 346 1.13e-32 c.93.1.1 99864 1z15A 344 3.26e-32 2liv 344 4.32e-32 3eafA 391 1.22e-31 1pea 385 2.32e-31 3ckmA 327 7.69e-27 c.93.1.1 156739 1dp4A 435 1.59e-25 c.93.1.1 35710 1jdpA 441 2.71e-25 c.93.1.1 62906 2e4uA 555 6.73e-24 1ewkA 490 8.02e-24 c.93.1.1 35712 3lmkA 492 2.43e-21 3ks9A 496 2.74e-20 2wjwA 388 1.13e-18 3h5vA 394 1.82e-18 3h6gA 395 6.23e-17 3jpwA 363 5.03e-11 1jx6A 342 1.02e-05 c.93.1.1 67406 3lkvA 302 5.82e-05 1tlfA 301 0.000778 c.93.1.1 35687 3lftA 295 0.000994 3ksmA 276 0.001813 2qh8A 302 0.003660 3l49A 291 0.005153 2dri 271 0.005190 1jyeA 349 0.005611 c.93.1.1 67455 2vk2A 306 0.01223 1bykA 255 0.01338 c.93.1.1 35706 1dbqA 289 0.01723 c.93.1.1 35666 3g1wA 305 0.02013 3gbvA 304 0.02291 2rjoA 332 0.02561 3l6uA 293 0.02883 2qvcA 313 0.04851 3c6qA 311 0.05138 1gudA 288 0.05630 c.93.1.1 83326 8abp 306 0.05739 3ejwA 315 0.06731 3h75A 350 0.07084 8abpA 306 0.07132 c.93.1.1 35647 1tjyA 316 0.08569 c.93.1.1 107062 1jftA 340 0.1407 a.35.1.5,c.93.1.1 66652,66653 3d02A 303 0.2082 2driA 271 0.2176 c.93.1.1 35637 2fepA 289 0.3678 2h3hA 313 0.5250 2fqxA 318 0.6063 2o20A 332 0.6694 2hqbA 296 0.7324 1gca 309 0.7574 2rgyA 290 0.8286 3brqA 296 1.506 2iksA 293 2.956 3a9sA 595 3.278 3h5oA 339 3.364 2qu7A 288 3.474 1dkuA 317 5.871 c.61.1.2,c.61.1.2 34118,34119 3brsA 289 6.322 3bilA 348 8.316 1rrmA 386 8.330 e.22.1.2 105081 1n7kA 234 9.099 c.1.10.1 85374 2rfgA 297 9.356 3gv0A 288 10.80 3bblA 287 11.27 3l6eA 235 13.08 2fvyA 309 13.52 c.93.1.1 134227 1xkyA 301 13.52 c.1.10.1 122094 3lerA 301 13.71 3c3kA 285 14.61 1f74A 293 15.56 c.1.10.1 29079 1zin 217 15.65 2pjuA 225 15.95 c.92.3.1 149579 1reqA 727 16.18 c.1.19.1,c.23.6.1 29620,31247 1yb1A 272 16.49 c.2.1.2 116599 3ixlA 240 16.60 2ioyA 283 16.65 3a24A 641 17.85 3egcA 291 18.57 3k4hA 292 18.79 1p0kA 349 20.36 c.1.4.1 87648 1o0yA 260 20.48 c.1.10.1 80756 1vc4A 254 20.90 c.1.2.4 100557 3huuA 305 21.10 1s3iA 310 21.21 b.46.1.1,c.65.1.1 98435,98436 2qulA 290 21.46 2eq5A 228 21.94 1vchA 175 23.04 c.61.1.1 119980 1o08A 221 24.23 c.108.1.6 86525 1fcjA 322 25.46 c.79.1.1 35289 3hs3A 277 26.04 1u9yA 284 26.10 c.61.1.2,c.61.1.2 119655,119656 1dhpA 292 26.78 c.1.10.1 29097 1vmeA 410 27.36 c.23.5.1,d.157.1.3 108893,108894 3e3mA 355 28.17 2ehhA 294 28.24 2fn9A 290 29.10 1uiuA 502 29.41 c.94.1.1 99434 2blnA 305 29.84 b.46.1.1,c.65.1.1 128734,128735 3bleA 337 30.46 1o5kA 306 30.50 c.1.10.1 92504 2q5cA 196 31.48 1ve1A 304 31.89 c.79.1.1 120007 1a7j 290 31.95 2z1nA 260 32.49 3h7aA 252 32.86 2yxbA 161 33.62 1j8yF 297 34.40 a.24.13.1,c.37.1.10 62747,62748 3jy6A 276 35.38 3hcwA 295 35.77 2ojpA 292 35.79 3fluA 297 35.95 2ho4A 259 37.83 1z7wA 322 39.89 c.79.1.1 124674 1l1qA 186 40.34 c.61.1.1 77653 2vvpA 162 40.60 c.121.1.1 153645 3ctpA 330 41.72 2p91A 285 41.76 3gybA 280 41.78 1w3iA 293 41.98 c.1.10.1 109152 1bmtA 246 42.15 a.46.1.1,c.23.6.1 17757,31235 2ac7A 235 44.18 c.56.2.1 126543 2jahA 247 45.41 2i2xB 258 46.91 1euaA 213 47.45 c.1.10.1 29155 3dtvA 240 47.48 2purA 292 47.61 2hrdA 253 48.36 3i1jA 247 48.92 2ae2A 260 49.14 c.2.1.2 29945 3kjxA 344 49.39 2a6nA 292 49.73 c.1.10.1 126289 3daqA 292 49.83 2a6lA 292 50.84 c.1.10.1 126285 3fcpA 381 54.63 1vl8A 267 56.69 c.2.1.2 108733 3g49A 277 56.87 1jq5A 370 57.48 e.22.1.2 67084 3lylA 247 57.68 3fwzA 140 58.09 2bw0A 329 58.47 b.46.1.1,c.65.1.1 129303,129304 1itcA 516 59.37 b.3.1.1,c.1.8.1 83705,83706 1x7gA 261 59.97 c.2.1.2 114929 2hf9A 226 60.24 3loqA 294 60.79 1fmtA 314 61.15 b.46.1.1,c.65.1.1 25758,34174 2zatA 260 61.78 1y7lA 316 62.32 c.79.1.1 122695 1vhnA 318 64.27 c.1.4.1 100693 3d8uA 275 64.47 2a4kA 263 64.67 c.2.1.2 126156 1ys7A 233 64.75 a.4.6.1,c.23.1.1 123961,123962 3lb0A 276 66.09 1dtwB 342 66.44 c.36.1.7,c.48.1.2 31828,33102 2vc6A 292 66.62 1jbwA 428 69.44 c.59.1.2,c.72.2.2 62860,62861 1v1rA 400 70.98 c.36.1.11 108272 3g85A 289 71.12 1y0bA 197 71.33 c.61.1.1 122476 1b5tA 275 71.93 c.1.23.1 29676 2r8wA 332 72.73 3cprA 304 73.20 1a7jA 290 73.44 c.37.1.6 31952 1j0dA 341 75.19 c.79.1.1 83902 1igs 248 75.61 1cb0A 283 76.30 c.56.2.1 33790 1s8nA 205 76.35 c.23.1.1 105374 1a53 247 78.44 2p0oA 372 78.65 3ho1A 685 78.71 1u3dA 509 79.34 a.99.1.1,c.28.1.1 107638,107639 2v82A 212 80.27 2aeeA 211 80.95 c.61.1.1 126620 3dl0A 216 81.07 3m7wA 255 81.55 3he8A 149 81.70 3kzvA 254 82.34 3kl4A 433 83.14 3eb2A 300 83.39 1uslA 170 83.95 c.121.1.1 99871 1geeA 261 84.12 c.2.1.2 90509 1owlA 484 84.46 a.99.1.1,c.28.1.1 93647,93648 3labA 217 84.75 2z5lA 511 85.55 1gcoA 261 86.80 c.2.1.2 29884 5reqA 727 87.44 c.1.19.1,c.23.6.1 29632,31259 3imfA 257 88.02 3llvA 141 88.05 1y80A 210 88.89 3cinA 394 89.04 1vr5A 547 89.32 c.94.1.1 120437