# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i09A 375 7.04e-36 3i45A 387 4.04e-35 3hutA 358 5.34e-35 1peaA 385 9.09e-33 c.93.1.1 35662 3h5lA 419 3.65e-32 3lopA 364 6.17e-32 3lkbA 392 9.21e-32 1usgA 346 6.58e-31 c.93.1.1 99864 2liv 344 2.39e-30 1z15A 344 2.46e-30 3eafA 391 3.60e-30 1pea 385 9.23e-30 3ckmA 327 1.34e-25 c.93.1.1 156739 1dp4A 435 2.04e-24 c.93.1.1 35710 1jdpA 441 4.17e-24 c.93.1.1 62906 2e4uA 555 9.06e-23 1ewkA 490 1.27e-22 c.93.1.1 35712 3lmkA 492 2.57e-20 3ks9A 496 2.43e-19 2wjwA 388 4.71e-18 3h5vA 394 7.76e-18 3h6gA 395 2.73e-16 3jpwA 363 1.03e-10 1jx6A 342 1.16e-05 c.93.1.1 67406 3lkvA 302 5.90e-05 1tlfA 301 0.001014 c.93.1.1 35687 3lftA 295 0.001071 3ksmA 276 0.001618 2dri 271 0.003459 2qh8A 302 0.004215 3l49A 291 0.004996 1jyeA 349 0.006800 c.93.1.1 67455 2vk2A 306 0.008874 3g1wA 305 0.01293 1bykA 255 0.01333 c.93.1.1 35706 1dbqA 289 0.01603 c.93.1.1 35666 3gbvA 304 0.01774 2rjoA 332 0.02003 3l6uA 293 0.02428 1gudA 288 0.02906 c.93.1.1 83326 2qvcA 313 0.03304 3c6qA 311 0.03448 8abp 306 0.03814 3ejwA 315 0.04811 3h75A 350 0.04836 1tjyA 316 0.05028 c.93.1.1 107062 8abpA 306 0.05506 c.93.1.1 35647 1jftA 340 0.09565 a.35.1.5,c.93.1.1 66652,66653 2driA 271 0.1165 c.93.1.1 35637 3d02A 303 0.1438 2hqbA 296 0.3264 2h3hA 313 0.3409 2fepA 289 0.4251 2fqxA 318 0.4652 2o20A 332 0.6582 2rgyA 290 0.7233 1gca 309 0.7568 3brqA 296 1.031 3a9sA 595 2.026 3brsA 289 2.123 2iksA 293 2.359 2qu7A 288 2.363 3h5oA 339 2.773 2rfgA 297 7.793 3bblA 287 8.356 1n7kA 234 8.610 c.1.10.1 85374 1dkuA 317 8.654 c.61.1.2,c.61.1.2 34118,34119 2fvyA 309 8.725 c.93.1.1 134227 1f74A 293 8.853 c.1.10.1 29079 1rrmA 386 9.063 e.22.1.2 105081 3bilA 348 9.274 1xkyA 301 10.10 c.1.10.1 122094 2ioyA 283 10.50 3gv0A 288 11.86 1zin 217 12.85 1reqA 727 12.91 c.1.19.1,c.23.6.1 29620,31247 3ixlA 240 13.20 2eq5A 228 14.02 3lerA 301 14.31 2qulA 290 15.28 3hs3A 277 15.47 3c3kA 285 15.54 3huuA 305 15.79 3l6eA 235 15.96 3hcwA 295 16.31 2pjuA 225 16.85 c.92.3.1 149579 1o0yA 260 16.87 c.1.10.1 80756 1s3iA 310 17.59 b.46.1.1,c.65.1.1 98435,98436 1vmeA 410 17.64 c.23.5.1,d.157.1.3 108893,108894 3egcA 291 17.70 2ehhA 294 17.91 3jy6A 276 18.32 1dhpA 292 19.96 c.1.10.1 29097 2fn9A 290 20.96 1vc4A 254 21.86 c.1.2.4 100557 3k4hA 292 22.30 1p0kA 349 22.36 c.1.4.1 87648 1j8yF 297 22.58 a.24.13.1,c.37.1.10 62747,62748 1o08A 221 22.79 c.108.1.6 86525 1yb1A 272 23.34 c.2.1.2 116599 3bleA 337 23.61 1vchA 175 23.74 c.61.1.1 119980 1fcjA 322 23.76 c.79.1.1 35289 3fluA 297 24.13 2purA 292 26.74 3e3mA 355 27.17 2ojpA 292 27.54 2vvpA 162 28.93 c.121.1.1 153645 1w3iA 293 29.12 c.1.10.1 109152 1bmtA 246 29.47 a.46.1.1,c.23.6.1 17757,31235 3kjxA 344 31.82 2z1nA 260 32.16 2i2xB 258 32.23 3a24A 641 32.40 3gybA 280 32.63 2q5cA 196 33.11 1u9yA 284 34.19 c.61.1.2,c.61.1.2 119655,119656 1o5kA 306 34.69 c.1.10.1 92504 3daqA 292 34.93 2a6lA 292 35.17 c.1.10.1 126285 2a6nA 292 35.36 c.1.10.1 126289 2ae2A 260 35.64 c.2.1.2 29945 1l1qA 186 37.58 c.61.1.1 77653 2yxbA 161 37.58 1z7wA 322 37.74 c.79.1.1 124674 2blnA 305 38.98 b.46.1.1,c.65.1.1 128734,128735 1ve1A 304 39.16 c.79.1.1 120007 2vc6A 292 39.25 1jq5A 370 39.27 e.22.1.2 67084 2ho4A 259 40.42 3d8uA 275 41.05 1igs 248 41.78 2bw0A 329 42.16 b.46.1.1,c.65.1.1 129303,129304 3g85A 289 42.44 3ctpA 330 43.83 3h7aA 252 46.30 2ac7A 235 48.07 c.56.2.1 126543 3i1jA 247 49.35 1j0dA 341 49.67 c.79.1.1 83902 3he8A 149 50.21 1uiuA 502 51.15 c.94.1.1 99434 1euaA 213 51.24 c.1.10.1 29155 3cprA 304 51.45 3eb2A 300 52.72 3g49A 277 53.91 1y7lA 316 53.92 c.79.1.1 122695 2p91A 285 53.94 2jahA 247 54.00 3ho1A 685 54.18 2hrdA 253 54.33 1fmtA 314 54.65 b.46.1.1,c.65.1.1 25758,34174 1b5tA 275 55.20 c.1.23.1 29676 3loqA 294 56.12 1uslA 170 58.36 c.121.1.1 99871 1geeA 261 58.40 c.2.1.2 90509 3dtvA 240 58.71 1x7gA 261 59.07 c.2.1.2 114929 1gcoA 261 60.48 c.2.1.2 29884 5nul 138 60.73 1ys7A 233 61.02 a.4.6.1,c.23.1.1 123961,123962 1kq3A 376 61.73 e.22.1.2 68790 2zatA 260 62.23 2v9dA 343 62.44 1y80A 210 62.59 1dtwB 342 63.12 c.36.1.7,c.48.1.2 31828,33102 2d59A 144 65.09 c.2.1.8 131266 1v1rA 400 65.40 c.36.1.11 108272 3fcpA 381 66.37 1s8nA 205 67.64 c.23.1.1 105374 3lb0A 276 68.42 3lylA 247 68.85 2r8wA 332 69.95 1a7j 290 69.97 1u7pA 164 70.02 c.108.1.17 113095 1jbwA 428 70.12 c.59.1.2,c.72.2.2 62860,62861 3hicA 320 70.38 1ru8A 232 72.59 c.26.2.1 97849 1vl8A 267 73.27 c.2.1.2 108733 2nuwA 288 73.84 3k9cA 289 74.45 1itcA 516 74.60 b.3.1.1,c.1.8.1 83705,83706 1a53 247 75.36 1vhnA 318 75.46 c.1.4.1 100693 1ja9A 274 76.01 c.2.1.2 62817 3fwzA 140 76.40 2a4kA 263 76.67 c.2.1.2 126156 3iebA 218 77.77 3m7wA 255 78.53 3hdgA 137 80.32 2c07A 285 80.60 c.2.1.2 129577 2hf9A 226 80.86 5reqA 727 81.28 c.1.19.1,c.23.6.1 29632,31259 1vr5A 547 81.61 c.94.1.1 120437 1knqA 175 81.68 c.37.1.17 72786 3labA 217 81.73 1hl2A 297 82.52 c.1.10.1 83581 2z5lA 511 84.39 1lssA 140 84.87 c.2.1.9 74246 3kkeA 303 87.03 3imfA 257 87.62 3bi8A 291 88.86 1u3dA 509 89.47 a.99.1.1,c.28.1.1 107638,107639 2p1fA 291 89.73 1tv8A 340 89.81 c.1.28.3 107352