# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i09A 375 4.64e-33 3i45A 387 2.94e-32 3hutA 358 3.84e-32 1peaA 385 5.66e-30 c.93.1.1 35662 3h5lA 419 1.90e-29 3lkbA 392 2.35e-29 3lopA 364 2.71e-29 1usgA 346 2.04e-28 c.93.1.1 99864 1z15A 344 6.32e-28 2liv 344 8.16e-28 3eafA 391 1.65e-27 1pea 385 2.39e-27 3ckmA 327 1.45e-23 c.93.1.1 156739 1dp4A 435 1.72e-22 c.93.1.1 35710 1jdpA 441 4.27e-22 c.93.1.1 62906 1ewkA 490 7.33e-21 c.93.1.1 35712 2e4uA 555 1.14e-20 3lmkA 492 6.24e-19 3ks9A 496 7.63e-18 2wjwA 388 6.77e-17 3h5vA 394 1.17e-16 3h6gA 395 3.06e-15 3jpwA 363 1.50e-10 1jx6A 342 1.89e-05 c.93.1.1 67406 3lkvA 302 0.000657 1tlfA 301 0.001650 c.93.1.1 35687 2qh8A 302 0.003306 3ksmA 276 0.005948 2dri 271 0.007435 3l49A 291 0.007937 1jyeA 349 0.009068 c.93.1.1 67455 3gbvA 304 0.009159 3lftA 295 0.01125 2vk2A 306 0.01356 1dbqA 289 0.01501 c.93.1.1 35666 3g1wA 305 0.01574 1gudA 288 0.01736 c.93.1.1 83326 1bykA 255 0.02448 c.93.1.1 35706 2rjoA 332 0.02577 2qvcA 313 0.03056 3c6qA 311 0.03203 3l6uA 293 0.03204 8abpA 306 0.04441 c.93.1.1 35647 2h3hA 313 0.05085 1tjyA 316 0.06129 c.93.1.1 107062 3d02A 303 0.07843 8abp 306 0.1058 2driA 271 0.1525 c.93.1.1 35637 3ejwA 315 0.1578 1jftA 340 0.2193 a.35.1.5,c.93.1.1 66652,66653 3h75A 350 0.2374 3brsA 289 0.5524 2fepA 289 0.5651 1gca 309 0.6793 2rgyA 290 0.7517 2fqxA 318 0.9846 2o20A 332 1.293 3brqA 296 1.295 2qu7A 288 2.040 2fvyA 309 2.161 c.93.1.1 134227 2ioyA 283 2.396 2iksA 293 3.819 3h5oA 339 4.072 3lerA 301 7.443 1rrmA 386 7.809 e.22.1.2 105081 2hqbA 296 8.069 2rfgA 297 8.559 3bblA 287 9.547 3hs3A 277 10.70 3c3kA 285 10.99 3hcwA 295 11.19 3huuA 305 11.26 2fn9A 290 11.43 1reqA 727 11.43 c.1.19.1,c.23.6.1 29620,31247 3gv0A 288 12.36 1o08A 221 13.60 c.108.1.6 86525 1xkyA 301 15.42 c.1.10.1 122094 1dkuA 317 15.50 c.61.1.2,c.61.1.2 34118,34119 3bilA 348 15.98 1o5kA 306 16.20 c.1.10.1 92504 2ehhA 294 16.52 1q6oA 216 16.81 c.1.2.3 95986 2pjuA 225 17.21 c.92.3.1 149579 1s3iA 310 19.80 b.46.1.1,c.65.1.1 98435,98436 2purA 292 21.51 3k4hA 292 23.00 2blnA 305 25.17 b.46.1.1,c.65.1.1 128734,128735 1f74A 293 25.86 c.1.10.1 29079 3daqA 292 25.97 1dhpA 292 26.87 c.1.10.1 29097 2yxbA 161 29.68 3a9sA 595 29.76 2a6nA 292 30.51 c.1.10.1 126289 3k9cA 289 32.08 2r8wA 332 32.14 3jy6A 276 34.06 2ojpA 292 34.32 1p0kA 349 34.83 c.1.4.1 87648 2ho4A 259 35.04 1ru8A 232 35.27 c.26.2.1 97849 3e3mA 355 35.65 2eq5A 228 35.80 2a6lA 292 35.87 c.1.10.1 126285 3cprA 304 36.69 3fluA 297 36.93 3ixlA 240 37.60 3egcA 291 37.95 2bw0A 329 38.32 b.46.1.1,c.65.1.1 129303,129304 1s8nA 205 38.37 c.23.1.1 105374 1j8yF 297 39.11 a.24.13.1,c.37.1.10 62747,62748 1hl2A 297 39.29 c.1.10.1 83581 1u9yA 284 39.94 c.61.1.2,c.61.1.2 119655,119656 2qulA 290 39.98 1uiuA 502 40.20 c.94.1.1 99434 1vmeA 410 41.64 c.23.5.1,d.157.1.3 108893,108894 3cinA 394 42.08 3fwzA 140 42.70 1nal1 297 43.63 2hf9A 226 44.46 1vljA 407 44.67 e.22.1.2 108832 3l6eA 235 45.21 3gybA 280 46.11 2vvpA 162 46.35 c.121.1.1 153645 1u7pA 164 46.66 c.108.1.17 113095 3a24A 641 47.30 2ae2A 260 47.71 c.2.1.2 29945 1fmtA 314 48.05 b.46.1.1,c.65.1.1 25758,34174 1jbwA 428 48.57 c.59.1.2,c.72.2.2 62860,62861 1zin 217 48.81 2vc6A 292 49.32 1hslA 238 49.33 c.94.1.1 35804 2regA 298 49.41 1b5tA 275 49.82 c.1.23.1 29676 1v1rA 400 51.46 c.36.1.11 108272 3eb2A 300 52.37 3iebA 218 53.47 1vchA 175 53.61 c.61.1.1 119980 1n7kA 234 54.88 c.1.10.1 85374 2ac7A 235 55.50 c.56.2.1 126543 2d59A 144 55.56 c.2.1.8 131266 2p0oA 372 56.51 3he8A 149 57.29 1jq5A 370 58.17 e.22.1.2 67084 1lssA 140 58.50 c.2.1.9 74246 3kkeA 303 58.59 1xbyA 216 58.75 c.1.2.3 121846 2q5cA 196 59.00 1id1A 153 59.36 c.2.1.9 62286 2v9dA 343 60.49 3i1jA 247 60.72 1tqjA 230 61.65 c.1.2.2 107228 1mucA 373 61.98 c.1.11.2,d.54.1.1 29236,38880 1ve1A 304 64.33 c.79.1.1 120007 3kjxA 344 64.46 1cb0A 283 64.52 c.56.2.1 33790 2zwmA 130 66.02 1ys7A 233 67.16 a.4.6.1,c.23.1.1 123961,123962 3irsA 291 67.26 3jr2A 218 67.66 2gzxA 265 69.07 2fliA 220 69.81 c.1.2.2 133714 2o1sA 621 70.16 1rd5A 262 70.83 c.1.2.4 111772 2wkjA 303 71.19 1dorA 311 71.59 c.1.4.1 28595 3e61A 277 72.33 3f6pA 120 72.54 1l1qA 186 73.53 c.61.1.1 77653 3labA 217 73.82 2dztA 248 75.64 1nsjA 205 75.67 c.1.2.4 28560 3fcpA 381 75.95 2ekcA 262 76.21 3h7aA 252 76.95 3loqA 294 78.85 1u0sY 118 80.00 c.23.1.1 107566 1ja9A 274 81.22 c.2.1.2 62817 2z1nA 260 81.50 2vvrA 149 83.44 3ctpA 330 84.38 1euaA 213 85.17 c.1.10.1 29155 3ho1A 685 85.84 3clkA 290 85.88 3dgbA 382 87.84 2fr1A 486 87.86 c.2.1.2,c.2.1.2 133961,133962 1vl8A 267 87.92 c.2.1.2 108733 1ad4A 266 88.22 c.1.21.1 29670 1o0yA 260 88.55 c.1.10.1 80756 1xsjA 778 89.42 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 3g85A 289 89.69 1dtwB 342 89.77 c.36.1.7,c.48.1.2 31828,33102 2z5lA 511 89.93