# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i09A	375	1.10e-12		
3i45A	387	3.08e-12		
3hutA	358	3.58e-12		
1peaA	385	1.84e-11	c.93.1.1	35662
3lkbA	392	2.28e-11		
3lopA	364	3.60e-11		
3h5lA	419	5.09e-11		
1usgA	346	5.23e-11	c.93.1.1	99864
2liv	344	7.30e-11		
3eafA	391	1.25e-10		
1z15A	344	1.36e-10		
1pea	385	1.43e-10		
3ckmA	327	5.15e-09	c.93.1.1	156739
1jdpA	441	1.14e-08	c.93.1.1	62906
1dp4A	435	1.18e-08	c.93.1.1	35710
1ewkA	490	2.56e-08	c.93.1.1	35712
2e4uA	555	2.82e-08		
3lmkA	492	8.97e-08		
3ks9A	496	3.09e-07		
2wjwA	388	1.10e-06		
3h5vA	394	1.99e-06		
3h6gA	395	2.51e-06		
3jpwA	363	0.000687		
1jx6A	342	0.05165	c.93.1.1	67406
3lkvA	302	0.2402		
1jyeA	349	0.5525	c.93.1.1	67455
1tlfA	301	0.5812	c.93.1.1	35687
3l49A	291	0.6241		
2qh8A	302	0.6665		
3ksmA	276	0.8446		
3lftA	295	0.8557		
3gbvA	304	0.9507		
2dri	271	1.054		
3g1wA	305	1.352		
2vk2A	306	1.352		
8abp	306	1.354		
1gudA	288	1.434	c.93.1.1	83326
2rjoA	332	1.454		
1dbqA	289	1.858	c.93.1.1	35666
8abpA	306	2.269	c.93.1.1	35647
3l6uA	293	2.282		
2qvcA	313	2.408		
3c6qA	311	2.669		
3ejwA	315	2.974		
2h3hA	313	3.217		
1tjyA	316	3.221	c.93.1.1	107062
3d02A	303	3.441		
3h75A	350	3.590		
1bykA	255	3.729	c.93.1.1	35706
2driA	271	4.354	c.93.1.1	35637
2rgyA	290	5.095		
1gca	309	9.575		
2fqxA	318	10.34		
3brsA	289	10.60		
2fepA	289	10.83		
2o20A	332	10.84		
3brqA	296	14.19		
1jftA	340	14.45	a.35.1.5,c.93.1.1	66652,66653
2qu7A	288	14.62		
3bblA	287	16.08		
2rfgA	297	16.17		
2fn9A	290	19.11		
2ioyA	283	20.15		
1xkyA	301	20.64	c.1.10.1	122094
3hs3A	277	20.88		
3e3mA	355	23.35		
3bilA	348	23.95		
3h5oA	339	24.26		
2a6nA	292	24.72	c.1.10.1	126289
3huuA	305	26.27		
3ctpA	330	27.62		
3k4hA	292	28.22		
2ojpA	292	30.51		
2a6lA	292	31.35	c.1.10.1	126285
2hqbA	296	32.85		
2iksA	293	34.99		
3gv0A	288	36.84		
2fvyA	309	37.45	c.93.1.1	134227
1dkuA	317	38.67	c.61.1.2,c.61.1.2	34118,34119
2regA	298	40.92		
2atsA	292	42.23	c.1.10.1	127306
3c3kA	285	42.78		
2r8wA	332	42.98		
3gybA	280	43.30		
3a9sA	595	44.48		
3hcwA	295	50.52		
1vmeA	410	50.54	c.23.5.1,d.157.1.3	108893,108894
3cprA	304	50.68		
2pjuA	225	53.21	c.92.3.1	149579
3k9cA	289	55.92		
2eq5A	228	58.66		
3eb2A	300	59.03		
2purA	292	62.24		
3lerA	301	65.06		
2o1sA	621	67.33		
1dhpA	292	67.94	c.1.10.1	29097
3egcA	291	70.91		
1q6oA	216	73.08	c.1.2.3	95986
1euaA	213	73.95	c.1.10.1	29155
1n7kA	234	75.40	c.1.10.1	85374
2v82A	212	75.73		
3h5dA	311	76.88		
3a1eA	287	77.43		
3gygA	289	78.92		
3mc1A	226	79.08		
2yxbA	161	79.58		
1hl2A	297	81.77	c.1.10.1	83581
1o58A	303	82.36	c.79.1.1	92491
1f74A	293	82.36	c.1.10.1	29079
1wohA	305	82.55	c.42.1.1	109446
3ixlA	240	84.56		
2ac7A	235	85.24	c.56.2.1	126543
1k77A	260	86.53	c.1.15.5	72096
1o08A	221	86.68	c.108.1.6	86525
1ru8A	232	87.22	c.26.2.1	97849
1ta9A	450	87.43		
2vvpA	162	88.02	c.121.1.1	153645
1o5kA	306	88.27	c.1.10.1	92504
1gq6A	313	89.09	c.42.1.1	70341
1mucA	373	89.94	c.1.11.2,d.54.1.1	29236,38880