# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i09A 375 5.09e-31 3i45A 387 1.03e-30 3hutA 358 1.49e-30 1peaA 385 8.47e-29 c.93.1.1 35662 3h5lA 419 2.71e-28 3lkbA 392 5.96e-28 3lopA 364 7.58e-28 1usgA 346 7.17e-27 c.93.1.1 99864 2liv 344 1.66e-26 1z15A 344 2.71e-26 1pea 385 2.82e-26 3eafA 391 3.51e-26 3ckmA 327 9.81e-23 c.93.1.1 156739 1dp4A 435 2.05e-21 c.93.1.1 35710 1jdpA 441 3.37e-21 c.93.1.1 62906 2e4uA 555 6.41e-20 1ewkA 490 1.12e-19 c.93.1.1 35712 3lmkA 492 3.03e-18 3ks9A 496 4.14e-17 2wjwA 388 7.72e-16 3h5vA 394 3.27e-15 3h6gA 395 5.28e-14 3jpwA 363 3.12e-10 1jx6A 342 8.17e-05 c.93.1.1 67406 3lkvA 302 0.001385 1tlfA 301 0.006132 c.93.1.1 35687 3ksmA 276 0.01245 2qh8A 302 0.02556 3lftA 295 0.03181 1jyeA 349 0.04061 c.93.1.1 67455 3l49A 291 0.04354 2dri 271 0.05207 1bykA 255 0.05800 c.93.1.1 35706 3gbvA 304 0.05991 2vk2A 306 0.08809 3l6uA 293 0.09782 1dbqA 289 0.1125 c.93.1.1 35666 1gudA 288 0.1165 c.93.1.1 83326 2rjoA 332 0.2106 3g1wA 305 0.2533 3c6qA 311 0.3121 2qvcA 313 0.4344 1tjyA 316 0.5856 c.93.1.1 107062 3h75A 350 0.9048 3ejwA 315 0.9665 3d02A 303 1.013 1jftA 340 1.049 a.35.1.5,c.93.1.1 66652,66653 2h3hA 313 1.107 8abp 306 1.123 2driA 271 1.306 c.93.1.1 35637 8abpA 306 1.624 c.93.1.1 35647 2o20A 332 2.602 2qu7A 288 2.628 2fepA 289 2.794 2rgyA 290 3.218 1gca 309 3.411 2fqxA 318 3.673 2iksA 293 3.760 3brsA 289 6.094 3brqA 296 6.722 3bilA 348 7.337 2rfgA 297 8.993 3h5oA 339 9.405 1zin 217 13.10 2hqbA 296 14.04 2fvyA 309 16.63 c.93.1.1 134227 3c3kA 285 18.49 1xkyA 301 20.57 c.1.10.1 122094 1dkuA 317 21.04 c.61.1.2,c.61.1.2 34118,34119 2a6nA 292 22.58 c.1.10.1 126289 3huuA 305 23.32 3fucA 284 24.47 3hs3A 277 25.46 2a6lA 292 27.47 c.1.10.1 126285 2ojpA 292 28.09 3bblA 287 28.21 2eq5A 228 31.23 3hcwA 295 31.94 1uiuA 502 32.06 c.94.1.1 99434 1rrmA 386 32.07 e.22.1.2 105081 1o5kA 306 35.58 c.1.10.1 92504 3lerA 301 36.45 1vmeA 410 36.97 c.23.5.1,d.157.1.3 108893,108894 1dhpA 292 37.34 c.1.10.1 29097 3e3mA 355 37.89 3bleA 337 39.44 3jy6A 276 39.47 1g2oA 268 42.27 c.56.2.1 60228 3labA 217 42.55 3fluA 297 42.67 1f74A 293 42.76 c.1.10.1 29079 1o08A 221 43.19 c.108.1.6 86525 2ehhA 294 44.65 1ve1A 304 45.15 c.79.1.1 120007 1n7kA 234 45.19 c.1.10.1 85374 3ju3A 118 45.83 2purA 292 49.29 1euaA 213 49.84 c.1.10.1 29155 3gv0A 288 53.75 1cb0A 283 54.45 c.56.2.1 33790 2pjuA 225 55.12 c.92.3.1 149579 3ctpA 330 56.10 2atsA 292 56.41 c.1.10.1 127306 1vchA 175 57.35 c.61.1.1 119980 1w3iA 293 58.45 c.1.10.1 109152 2fn9A 290 58.68 2r8wA 332 59.21 2vc6A 292 60.29 2ioyA 283 61.90 3cinA 394 61.95 1b8oA 284 63.49 c.56.2.1 33762 2hrdA 253 63.57 2nuwA 288 64.59 3daqA 292 66.88 1z7wA 322 67.30 c.79.1.1 124674 1s3iA 310 68.40 b.46.1.1,c.65.1.1 98435,98436 3kl4A 433 68.99 2q5cA 196 70.53 1v1rA 400 71.69 c.36.1.11 108272 3eb2A 300 72.35 1l1qA 186 72.41 c.61.1.1 77653 3i6iA 346 74.40 2ac7A 235 75.00 c.56.2.1 126543 1iukA 140 75.41 c.2.1.8 83712 1akyA 220 77.22 c.37.1.1,g.41.2.1 31896,45197 2regA 298 84.45 3h7aA 252 84.66 1zuwA 272 85.88 2r91A 286 86.61 3gygA 289 88.29 3khsA 285 88.72