# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i09A 375 4.96e-36 3i45A 387 5.47e-35 3hutA 358 8.88e-35 1peaA 385 1.24e-32 c.93.1.1 35662 3lopA 364 4.52e-32 3h5lA 419 5.23e-32 3lkbA 392 7.58e-32 1usgA 346 9.18e-31 c.93.1.1 99864 2liv 344 2.53e-30 1z15A 344 3.79e-30 1pea 385 7.42e-30 3eafA 391 8.35e-30 3ckmA 327 1.31e-25 c.93.1.1 156739 1dp4A 435 1.98e-24 c.93.1.1 35710 1jdpA 441 7.14e-24 c.93.1.1 62906 2e4uA 555 1.47e-22 1ewkA 490 3.74e-22 c.93.1.1 35712 3lmkA 492 2.39e-20 3ks9A 496 4.97e-19 2wjwA 388 6.13e-18 3h5vA 394 1.10e-17 3h6gA 395 4.63e-16 3jpwA 363 2.62e-11 1jx6A 342 7.35e-06 c.93.1.1 67406 3lkvA 302 0.000303 1tlfA 301 0.000735 c.93.1.1 35687 3ksmA 276 0.002821 2qh8A 302 0.004481 1jyeA 349 0.007448 c.93.1.1 67455 3lftA 295 0.007606 3l49A 291 0.007944 2dri 271 0.009183 1bykA 255 0.01314 c.93.1.1 35706 3gbvA 304 0.01526 2vk2A 306 0.02384 3g1wA 305 0.03069 1dbqA 289 0.03102 c.93.1.1 35666 3l6uA 293 0.03140 1gudA 288 0.08037 c.93.1.1 83326 2rjoA 332 0.08079 3c6qA 311 0.1226 3h75A 350 0.1353 1tjyA 316 0.1679 c.93.1.1 107062 3ejwA 315 0.1705 8abp 306 0.2115 2qvcA 313 0.2274 1jftA 340 0.2403 a.35.1.5,c.93.1.1 66652,66653 8abpA 306 0.2548 c.93.1.1 35647 3d02A 303 0.2688 2driA 271 0.2861 c.93.1.1 35637 2h3hA 313 0.3698 2o20A 332 0.3946 1gca 309 0.7883 2fepA 289 0.9254 2rgyA 290 1.014 2qu7A 288 1.438 2fqxA 318 1.669 3h5oA 339 2.197 2hqbA 296 2.766 3brqA 296 2.985 2iksA 293 3.305 3brsA 289 3.672 3bilA 348 6.952 2fvyA 309 7.300 c.93.1.1 134227 3bblA 287 7.592 3c3kA 285 8.160 3hcwA 295 9.670 3hs3A 277 9.791 2rfgA 297 10.65 3huuA 305 11.20 1rrmA 386 11.65 e.22.1.2 105081 3lerA 301 12.13 3gv0A 288 12.23 1zin 217 14.50 1uiuA 502 15.39 c.94.1.1 99434 1s3iA 310 18.52 b.46.1.1,c.65.1.1 98435,98436 1vmeA 410 19.69 c.23.5.1,d.157.1.3 108893,108894 1dkuA 317 20.61 c.61.1.2,c.61.1.2 34118,34119 1n7kA 234 21.05 c.1.10.1 85374 1xkyA 301 22.72 c.1.10.1 122094 1reqA 727 22.90 c.1.19.1,c.23.6.1 29620,31247 2pjuA 225 24.10 c.92.3.1 149579 2purA 292 24.40 3e3mA 355 25.41 3ju3A 118 26.50 3a9sA 595 27.21 1vchA 175 29.72 c.61.1.1 119980 3jy6A 276 30.01 2fn9A 290 30.68 3ctpA 330 30.69 1o08A 221 30.90 c.108.1.6 86525 3gybA 280 31.03 1o5kA 306 31.16 c.1.10.1 92504 1dhpA 292 32.09 c.1.10.1 29097 3daqA 292 32.90 2ojpA 292 33.05 1f74A 293 33.18 c.1.10.1 29079 1fmtA 314 33.59 b.46.1.1,c.65.1.1 25758,34174 2a6nA 292 34.42 c.1.10.1 126289 3cinA 394 34.82 3fluA 297 35.52 2ioyA 283 39.25 3l6eA 235 40.86 1ve1A 304 41.90 c.79.1.1 120007 2yxbA 161 42.05 2a6lA 292 42.81 c.1.10.1 126285 1u9yA 284 46.20 c.61.1.2,c.61.1.2 119655,119656 2ehhA 294 47.35 2eq5A 228 51.20 2q5cA 196 51.32 1euaA 213 51.36 c.1.10.1 29155 3egcA 291 52.04 3ixlA 240 55.64 3k4hA 292 55.82 3labA 217 55.86 1j8yF 297 56.18 a.24.13.1,c.37.1.10 62747,62748 2hrdA 253 56.37 1jq5A 370 58.13 e.22.1.2 67084 1yx1A 264 59.34 c.1.15.7 124169 1vc4A 254 60.57 c.1.2.4 100557 1a7j 290 60.85 2ho4A 259 61.80 3h7aA 252 61.83 2bw0A 329 62.42 b.46.1.1,c.65.1.1 129303,129304 2vvpA 162 64.15 c.121.1.1 153645 1v1rA 400 64.39 c.36.1.11 108272 2gkpA 167 64.95 d.351.1.1 147129 3fwzA 140 65.96 1ru8A 232 66.11 c.26.2.1 97849 2blnA 305 67.33 b.46.1.1,c.65.1.1 128734,128735 1xebA 150 68.84 d.108.1.1 115219 1l1qA 186 69.17 c.61.1.1 77653 1j0aA 325 70.02 c.79.1.1 83871 1hslA 238 70.15 c.94.1.1 35804 2z1nA 260 70.23 3a24A 641 70.49 2regA 298 71.13 2ac7A 235 73.46 c.56.2.1 126543 3hi2B 101 77.93 1b5tA 275 78.71 c.1.23.1 29676 2fliA 220 79.73 c.1.2.2 133714 1s8nA 205 80.33 c.23.1.1 105374 1zlqA 502 80.52 c.94.1.1 125253 2vc6A 292 80.58 3lteA 132 81.95 2jdcA 146 83.05 d.108.1.1 147977 2zcuA 286 84.55