# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i09A 375 9.68e-37 3i45A 387 5.06e-36 3hutA 358 8.80e-36 1peaA 385 1.47e-33 c.93.1.1 35662 3lopA 364 8.16e-33 3h5lA 419 1.32e-32 3lkbA 392 1.41e-32 1usgA 346 2.35e-31 c.93.1.1 99864 2liv 344 2.75e-31 1z15A 344 5.81e-31 3eafA 391 8.70e-31 1pea 385 1.19e-30 3ckmA 327 2.96e-26 c.93.1.1 156739 1dp4A 435 4.71e-25 c.93.1.1 35710 1jdpA 441 1.66e-24 c.93.1.1 62906 2e4uA 555 4.98e-23 1ewkA 490 6.42e-23 c.93.1.1 35712 3lmkA 492 4.11e-21 3ks9A 496 9.44e-20 2wjwA 388 1.92e-18 3h5vA 394 6.10e-18 3h6gA 395 1.49e-16 3jpwA 363 1.37e-11 1jx6A 342 6.31e-06 c.93.1.1 67406 3lkvA 302 0.000106 1tlfA 301 0.000821 c.93.1.1 35687 3lftA 295 0.001480 2qh8A 302 0.002082 3ksmA 276 0.002126 1jyeA 349 0.008666 c.93.1.1 67455 2dri 271 0.01167 3l49A 291 0.01271 1bykA 255 0.01795 c.93.1.1 35706 2vk2A 306 0.02064 2rjoA 332 0.02237 3gbvA 304 0.02400 1dbqA 289 0.02549 c.93.1.1 35666 1gudA 288 0.02550 c.93.1.1 83326 3l6uA 293 0.03196 3c6qA 311 0.04247 3g1wA 305 0.08607 3h75A 350 0.08932 2qvcA 313 0.09599 1tjyA 316 0.1065 c.93.1.1 107062 3ejwA 315 0.1301 8abp 306 0.1966 1jftA 340 0.2352 a.35.1.5,c.93.1.1 66652,66653 3d02A 303 0.2641 2h3hA 313 0.3301 8abpA 306 0.3756 c.93.1.1 35647 2o20A 332 0.4690 2driA 271 0.5038 c.93.1.1 35637 1gca 309 0.8167 2fepA 289 0.9570 2rgyA 290 1.012 2fqxA 318 1.103 2qu7A 288 1.390 2iksA 293 1.613 3brqA 296 1.652 3h5oA 339 3.200 3brsA 289 4.528 3bilA 348 4.989 2hqbA 296 5.282 1rrmA 386 6.857 e.22.1.2 105081 2fvyA 309 7.054 c.93.1.1 134227 2rfgA 297 7.628 1zin 217 8.261 3bblA 287 8.342 3hcwA 295 8.814 3huuA 305 9.721 1vmeA 410 9.885 c.23.5.1,d.157.1.3 108893,108894 3a9sA 595 11.26 1xkyA 301 12.26 c.1.10.1 122094 3c3kA 285 13.34 1dkuA 317 13.84 c.61.1.2,c.61.1.2 34118,34119 3hs3A 277 15.91 1n7kA 234 16.36 c.1.10.1 85374 2ho4A 259 17.76 1uiuA 502 17.79 c.94.1.1 99434 1reqA 727 17.93 c.1.19.1,c.23.6.1 29620,31247 1vchA 175 19.38 c.61.1.1 119980 3e3mA 355 19.42 1s3iA 310 19.86 b.46.1.1,c.65.1.1 98435,98436 3ju3A 118 20.55 1o08A 221 22.08 c.108.1.6 86525 3lerA 301 22.45 1f74A 293 23.26 c.1.10.1 29079 1dhpA 292 23.40 c.1.10.1 29097 1o5kA 306 24.29 c.1.10.1 92504 3gv0A 288 24.62 3fluA 297 25.81 2pjuA 225 26.07 c.92.3.1 149579 1l1qA 186 26.23 c.61.1.1 77653 3jy6A 276 26.30 1euaA 213 30.65 c.1.10.1 29155 2ojpA 292 31.26 3egcA 291 33.26 3ixlA 240 35.88 2purA 292 37.18 2vvpA 162 38.41 c.121.1.1 153645 2yxbA 161 38.60 2blnA 305 39.03 b.46.1.1,c.65.1.1 128734,128735 1a7j 290 39.78 3ctpA 330 39.80 1ve1A 304 39.93 c.79.1.1 120007 3labA 217 40.40 2a6nA 292 41.18 c.1.10.1 126289 3l6eA 235 41.47 1j8yF 297 42.63 a.24.13.1,c.37.1.10 62747,62748 2eq5A 228 42.85 3k4hA 292 43.45 2ehhA 294 43.64 2hrdA 253 44.36 1fmtA 314 45.22 b.46.1.1,c.65.1.1 25758,34174 3he8A 149 45.47 2a6lA 292 46.64 c.1.10.1 126285 3kl4A 433 46.85 2fn9A 290 47.37 3bleA 337 47.89 1u9yA 284 51.10 c.61.1.2,c.61.1.2 119655,119656 1v1rA 400 51.58 c.36.1.11 108272 3cinA 394 51.63 2z1nA 260 52.60 1cb0A 283 52.89 c.56.2.1 33790 2ioyA 283 54.13 1lssA 140 58.97 c.2.1.9 74246 2r8wA 332 59.04 1z7wA 322 59.16 c.79.1.1 124674 1o0yA 260 59.19 c.1.10.1 80756 3eb2A 300 60.41 1j0aA 325 60.61 c.79.1.1 83871 3hi2B 101 61.72 3daqA 292 63.50 1hslA 238 64.44 c.94.1.1 35804 2ak3A 226 64.73 c.37.1.1,g.41.2.1 31892,45193 1o1xA 155 64.81 c.121.1.1 86553 1p5dX 463 65.70 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 3d8uA 275 66.97 3gybA 280 67.61 1k2yX 463 67.74 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2p1fA 291 67.94 1fcjA 322 69.42 c.79.1.1 35289 3cs3A 277 69.89 1y0bA 197 70.95 c.61.1.1 122476 2gkpA 167 72.17 d.351.1.1 147129 3fwzA 140 72.43 3cprA 304 74.28 1vc4A 254 74.43 c.1.2.4 100557 3i1jA 247 74.75 3h7aA 252 75.52 2ac7A 235 76.91 c.56.2.1 126543 2q5cA 196 77.94 1j0dA 341 78.72 c.79.1.1 83902 1akyA 220 80.81 c.37.1.1,g.41.2.1 31896,45197 2aeeA 211 83.90 c.61.1.1 126620 2vvrA 149 83.95 1u7pA 164 84.32 c.108.1.17 113095 3kjxA 344 84.33 2i2xB 258 86.07 1y7lA 316 86.84 c.79.1.1 122695 3kkeA 303 87.71 2vc6A 292 88.20 1iukA 140 88.55 c.2.1.8 83712 1ru8A 232 88.93 c.26.2.1 97849 3ca8A 266 89.25 1t5oA 351 89.52 c.124.1.5 106459