# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3hutA 358 1.53e-24 3i09A 375 2.09e-24 3i45A 387 8.87e-24 1peaA 385 1.39e-22 c.93.1.1 35662 3lopA 364 1.89e-22 3lkbA 392 2.99e-22 3h5lA 419 3.00e-21 2liv 344 3.54e-21 1usgA 346 5.76e-21 c.93.1.1 99864 1z15A 344 7.15e-21 3eafA 391 8.40e-21 1pea 385 9.04e-21 1dp4A 435 6.47e-17 c.93.1.1 35710 3ckmA 327 7.53e-17 c.93.1.1 156739 1jdpA 441 4.41e-16 c.93.1.1 62906 2e4uA 555 6.41e-16 1ewkA 490 2.10e-15 c.93.1.1 35712 3lmkA 492 1.67e-14 3ks9A 496 2.01e-13 2wjwA 388 5.32e-13 3h5vA 394 9.13e-13 3h6gA 395 1.80e-11 3jpwA 363 2.45e-07 1jx6A 342 0.000175 c.93.1.1 67406 3lkvA 302 0.002146 1tlfA 301 0.004387 c.93.1.1 35687 3lftA 295 0.008905 3ksmA 276 0.01303 2qh8A 302 0.01572 3l49A 291 0.01857 1jyeA 349 0.01943 c.93.1.1 67455 2vk2A 306 0.02467 2dri 271 0.02597 2h3hA 313 0.02909 2qvcA 313 0.03386 3h75A 350 0.04274 3gbvA 304 0.04570 3g1wA 305 0.04876 3c6qA 311 0.07109 2rjoA 332 0.07215 1bykA 255 0.07366 c.93.1.1 35706 3ejwA 315 0.07759 3d02A 303 0.08303 3l6uA 293 0.08819 8abp 306 0.1198 1gca 309 0.1450 1tjyA 316 0.1454 c.93.1.1 107062 1gudA 288 0.1483 c.93.1.1 83326 8abpA 306 0.1551 c.93.1.1 35647 2driA 271 0.1696 c.93.1.1 35637 3brsA 289 0.2205 2fepA 289 0.3576 2fvyA 309 0.5200 c.93.1.1 134227 1jftA 340 0.6510 a.35.1.5,c.93.1.1 66652,66653 2qu7A 288 0.8818 2ioyA 283 1.252 3h5oA 339 1.289 2rgyA 290 1.486 2o20A 332 2.158 2fqxA 318 2.590 3c3kA 285 2.642 2eq5A 228 2.850 1dbqA 289 3.381 c.93.1.1 35666 3bilA 348 3.692 2fn9A 290 3.830 3ixlA 240 3.912 2iksA 293 3.948 3egcA 291 4.074 3brqA 296 4.226 3e3mA 355 6.825 3jy6A 276 7.941 3ctpA 330 9.368 1zuwA 272 9.530 2rfgA 297 9.602 3gybA 280 10.59 3l6eA 235 10.82 3hcwA 295 11.69 3k9cA 289 13.75 1j8yF 297 13.77 a.24.13.1,c.37.1.10 62747,62748 1f74A 293 14.40 c.1.10.1 29079 1hslA 238 14.56 c.94.1.1 35804 2vc6A 292 15.17 3k4hA 292 15.37 1dhpA 292 16.42 c.1.10.1 29097 3lerA 301 18.14 2hqbA 296 18.40 3m1rA 322 20.34 3dg9A 248 20.94 1wohA 305 21.93 c.42.1.1 109446 2vlbA 251 22.41 3huuA 305 22.59 2hf9A 226 23.21 1qq9A 284 27.45 c.56.5.4 33841 3ca8A 266 27.78 3istA 269 28.09 3eb2A 300 28.52 1xkyA 301 28.74 c.1.10.1 122094 1o5kA 306 28.99 c.1.10.1 92504 2v9dA 343 29.39 3kl4A 433 29.55 2a6nA 292 29.63 c.1.10.1 126289 2ojpA 292 29.78 3cs3A 277 30.40 3eprA 264 30.49 3daqA 292 31.36 1yb1A 272 31.77 c.2.1.2 116599 2a6lA 292 33.49 c.1.10.1 126285 1nal1 297 33.95 3kjxA 344 34.92 3d8uA 275 36.29 2purA 292 36.34 3fluA 297 36.41 2atsA 292 37.05 c.1.10.1 127306 3a9sA 595 37.26 2dgdA 223 37.86 3gv0A 288 37.87 1w3iA 293 38.19 c.1.10.1 109152 3bblA 287 39.36 2a4kA 263 40.32 c.2.1.2 126156 1lst 239 40.60 3e70C 328 42.99 3lhlA 287 45.82 1xjo 284 47.42 2ehhA 294 51.65 2vvpA 162 51.71 c.121.1.1 153645 1kq3A 376 52.21 e.22.1.2 68790 3cprA 304 52.82 3h7aA 252 52.95 1d3vA 323 54.56 c.42.1.1 32559 1smlA 269 55.47 d.157.1.1 42053 1xel 338 55.61 1hl2A 297 56.21 c.1.10.1 83581 2pzmA 330 56.64 3hs3A 277 56.83 1wd7A 261 57.55 c.113.1.1 114526 3ixmA 240 57.72 3g3jA 259 58.10 2nuwA 288 59.25 2vvrA 149 59.64 2wkjA 303 60.23 1ve1A 304 62.27 c.79.1.1 120007 3jvdA 333 62.38 3kkeA 303 65.34 1gq6A 313 65.46 c.42.1.1 70341 1l7mA 211 66.18 c.108.1.4 73664 1o58A 303 66.52 c.79.1.1 92491 1thfD 253 66.66 c.1.2.1 28535 2h0aA 276 68.86 3bi8A 291 71.36 1uslA 170 73.09 c.121.1.1 99871 1zu4A 320 75.02 2zo9B 274 78.10 d.159.1.11 154714 2c4nA 250 78.14 c.108.1.14 129837 1wy5A 317 78.32 c.26.2.5,d.229.1.1 121428,121429 2dm9A 198 79.41 d.81.4.1 146544 2gzmA 267 79.92 1o1xA 155 81.10 c.121.1.1 86553 3he8A 149 81.80 1k1xA 659 82.07 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1lstA 239 82.23 c.94.1.1 35755 2v25A 259 83.47 3gjzA 336 85.46 1kuxA 207 85.74 d.108.1.1 73021 2wk1A 282 87.95 2jahA 247 88.47 3labA 217 89.54