# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3i45A 379 2.630e-41 3h5lA 398 3.235e-39 3i09A 376 2.203e-38 1peaA 369 1.031e-37 c.93.1.1 35662 1usgA 346 5.420e-36 c.93.1.1 99864 3hutA 347 3.907e-35 3eafA 385 6.225e-33 3lopA 354 1.731e-28 1pea 369 3.378e-28 1pea 3lmkA 439 2.889e-26 2liv 345 1.870e-24 2liv 3lkbA 383 6.239e-24 1z15A 345 3.384e-22 3ks9A 446 2.443e-21 1ewkA 449 2.145e-17 1ewkA c.93.1.1 35712 1jdpA 397 1.864e-12 c.93.1.1 62906 3ckmA 319 9.120e-11 c.93.1.1 156739 3h6gA 378 3.582e-09 2e4uA 513 4.380e-08 1dp4A 426 3.263e-07 1dp4A c.93.1.1 35710 2wjwA 369 9.043e-06 3h5vA 377 1.062e-04 3jpwA 360 1.065e-02 2dri 272 1.011e-01 2dri 2ioyA 275 1.214e-01 3gqpB 146 2.357e-01 3cwcA 370 2.853e-01 3ksmA 277 3.379e-01 3d4xB 146 3.474e-01 2driA 272 3.549e-01 c.93.1.1 35637 3cnyA 301 5.564e-01 3gdjB 147 5.594e-01 2zsjA 351 5.680e-01 2w72B 147 5.700e-01 1g291 373 5.733e-01 1g291 1q8cA 133 6.548e-01 a.79.1.2 96202 3fs4B 147 6.568e-01 1poiB 261 7.086e-01 1poiB c.124.1.3 34155 1to6A 372 7.097e-01 c.141.1.1 107170 2g9wA 120 7.866e-01 a.4.5.39 147097 2r80B 147 9.258e-01 2h3hA 314 9.508e-01 1jx6A 339 1.329e+00 c.93.1.1 67406 1sd4A 123 1.636e+00 a.4.5.39 105428 2d5xB 147 1.672e+00 a.1.1.2 131283 1a9wE 146 1.949e+00 1cg5B a.1.1.2 15551 2qvcA 303 2.049e+00 1oxxK 353 2.144e+00 b.40.6.3 93715 c.37.1.12 93716 2w8tA 398 2.222e+00 2jg2A 399 2.242e+00 1oxsC 353 2.299e+00 b.40.6.3 87519 c.37.1.12 87520 2qywA 97 2.607e+00 1r0wA 267 2.677e+00 c.37.1.12 96754 1gajA 254 3.003e+00 1gajA c.37.1.12 60416 2hldG 266 3.006e+00 3h5tA 339 3.069e+00 1trb 317 3.200e+00 1trb 2gloA 60 3.254e+00 3c6qA 306 3.392e+00 3dx5A 275 3.506e+00 3a0gB 145 3.719e+00 3brqA 272 3.781e+00 3hceA 258 3.910e+00 1tzjA 332 4.050e+00 c.79.1.1 112868 1vpwA 339 4.209e+00 1qpzA a.35.1.5 17087 c.93.1.1 35680 1dbqA 277 4.562e+00 1qpzA c.93.1.1 35666 2vk2A 297 4.583e+00 2c2bA 445 4.623e+00 3h5oA 272 4.684e+00 1us5A 298 4.749e+00 c.94.1.1 99856 2ahoA 402 4.752e+00 b.43.3.1 126767 b.44.1.1 126768 c.37.1.8 126769 1d1gA 165 4.946e+00 1d1gA c.71.1.1 34889 1x3lA 437 4.952e+00 3cuoA 99 5.196e+00 3hcaA 259 5.387e+00 2olpA 152 5.494e+00 2x8uA 400 5.589e+00 3brsA 272 5.773e+00 1ji0A 241 5.902e+00 c.37.1.12 71665 1z47A 346 5.935e+00 8abp 306 5.957e+00 8abp 3dhtB 146 6.083e+00 1tlfA 297 6.193e+00 1tlfA c.93.1.1 35687 1e5xA 452 6.418e+00 c.79.1.1 59283 3e3mA 271 6.704e+00 2qn6A 394 6.725e+00 b.43.3.1 150911 b.44.1.1 150912 c.37.1.8 150913 1vplA 239 6.751e+00 c.37.1.12 113966 2b8nA 415 6.772e+00 c.118.1.1 128093 1obfO 336 6.876e+00 c.2.1.3 86768 d.81.1.1 86769 1tjyA 317 6.995e+00 c.93.1.1 107062 1gudA 289 7.099e+00 c.93.1.1 83326 1t6gC 183 7.209e+00 b.29.1.11 106569 1y8aA 314 7.714e+00 c.108.1.24 145913 1jg1A 216 7.894e+00 c.66.1.7 66661 3cs3A 267 7.948e+00 1miuA 672 8.103e+00 a.170.1.1 79153 a.171.1.1 79154 b.40.4.3 79155 b.40.4.3 79156 b.40.4.3 79157 1jftA 341 8.445e+00 a.35.1.5 66652 c.93.1.1 66653 2is9A 205 8.545e+00 2fn9A 281 8.591e+00 3g1wA 292 8.639e+00 1vjoA 378 8.673e+00 c.67.1.3 100827 3bpjA 71 8.723e+00 1mzjA 335 8.725e+00 c.95.1.2 79700 c.95.1.2 79701 1xhlA 275 8.781e+00 c.2.1.2 109591 1i3uA 128 8.894e+00 1gc1H b.1.1.1 61636 2citA 275 9.082e+00 c.1.8.3 130499 1tbxA 95 9.198e+00 a.4.5.48 106748 1mo9A 523 9.370e+00 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 2pzeA 227 9.386e+00 2rfvA 392 9.446e+00 2ep5A 350 9.609e+00 3egcA 262 9.663e+00 3bilA 258 9.664e+00 1hilB 215 9.912e+00 1igtB b.1.1.1 19787 b.1.1.2 20897 3h75A 329 1.026e+01 1dvfD 121 1.068e+01 1mfa b.1.1.1 20107 1jj7A 252 1.071e+01 c.37.1.12 63114 2qu7A 275 1.077e+01 3huuA 266 1.085e+01 1i8kB 120 1.132e+01 b.1.1.1 71131 1ghfH 213 1.144e+01 1igtB b.1.1.1 20109 b.1.1.2 21139 3ctpA 267 1.158e+01 1sgwA 201 1.159e+01 c.37.1.12 105541 3cqjA 277 1.180e+01 2ihyA 249 1.182e+01 1u2wA 106 1.200e+01 a.4.5.5 119487 1ahpA 797 1.207e+01 1a8i c.87.1.4 35544 2otuA 116 1.207e+01 3l6uA 275 1.208e+01 2czcA 335 1.211e+01 c.2.1.3 145052 d.81.1.1 131044 1nezG 123 1.232e+01 b.1.1.1 85592 2zdsA 322 1.237e+01 2vdwA 297 1.242e+01 1l2tA 231 1.243e+01 c.37.1.12 73514 2vywA 149 1.258e+01 1l5wA 797 1.269e+01 c.87.1.4 73605 3et4A 245 1.292e+01 3bioA 291 1.297e+01 1g6hA 255 1.310e+01 1gajA c.37.1.12 60318 3lmzA 252 1.323e+01 1e6oH 220 1.337e+01 1igtB b.1.1.1 20495 b.1.1.2 21453 1hlbA 158 1.338e+01 a.1.1.2 15625 1uvqC 21 1.340e+01 1qopB 391 1.341e+01 2tysB c.79.1.1 35270 2yv4A 103 1.345e+01 2gopA 321 1.352e+01 1b0uA 259 1.378e+01 1b0uA c.37.1.12 32370 2pgeA 357 1.381e+01 2o20A 272 1.422e+01 1xnkA 192 1.424e+01 b.29.1.11 122195 1ebdA 456 1.426e+01 1lvl c.3.1.5 30577 c.3.1.5 30578 d.87.1.1 40210 1on3A 518 1.426e+01 c.14.1.4 87107 c.14.1.4 87108 3kzvA 250 1.430e+01 1mbaA 147 1.467e+01 a.1.1.2 15149 1ashA 148 1.472e+01 a.1.1.2 15622 1jyeA 272 1.475e+01 c.93.1.1 67455 1qpzA 340 1.477e+01 1qpzA a.35.1.5 17097 c.93.1.1 35673 2i62A 258 1.477e+01 2gdmA 154 1.493e+01 a.1.1.2 15212 2zkzA 87 1.500e+01 3a09A 491 1.503e+01 2h00A 226 1.515e+01 c.66.1.54 135925 1kxqE 121 1.544e+01 b.1.1.1 73171 1v7cA 352 1.569e+01 c.79.1.1 100446 3d1kB 147 1.581e+01 a.1.1.2 157209 2tysB 396 1.594e+01 2tysB c.79.1.1 35272 2o7cA 399 1.599e+01 c.67.1.3 148663 1hlb 158 1.614e+01 1hlb 3c3kA 268 1.637e+01 1ub9A 101 1.647e+01 a.4.5.28 99159 2bbsA 254 1.650e+01 1rurH 219 1.671e+01 b.1.1.1 97879 b.1.1.2 97880 1y4iA 398 1.677e+01 c.67.1.3 122619 2zplA 93 1.677e+01 1vl6A 378 1.685e+01 c.2.1.7 108724 c.58.1.3 108725 1tetH 210 1.692e+01 1igtB b.1.1.1 19903 b.1.1.2 20997 3bblA 282 1.744e+01 2iacA 133 1.749e+01 3gv0A 270 1.769e+01 1arsA 397 1.813e+01 c.67.1.1 34287 1xmiA 268 1.824e+01 c.37.1.12 115489 1t15A 212 1.848e+01 c.15.1.3 99067 c.15.1.3 99068 3cy5B 146 1.851e+01 3f1cA 230 1.872e+01 2vgdA 196 1.878e+01 3kevA 185 1.879e+01 1ars 397 1.908e+01 1ajsA 2whmA 378 1.911e+01 1gca 310 1.938e+01 1gca 1okrA 121 1.938e+01 a.4.5.39 93269 3l49A 283 1.948e+01 1m32A 362 1.950e+01 c.67.1.3 78508 1q0xH 216 1.950e+01 b.1.1.1 95517 b.1.1.2 95518 2iksA 277 1.969e+01 8fabB 215 2.020e+01 1igtB b.1.1.1 19773 b.1.1.2 20883 2nr5A 61 2.047e+01 a.25.6.1 148349 1i60A 279 2.055e+01 c.1.15.4 71118 1cd8 115 2.078e+01 1cd8 1dnyA 77 2.086e+01 1dnyA a.28.1.2 16934 1r5bA 410 2.103e+01 b.43.3.1 104803 b.44.1.1 104804 c.37.1.8 104805 3m6sA 326 2.103e+01 2adgB 214 2.152e+01 b.1.1.2 126588 1dlfH 121 2.172e+01 1igtB b.1.1.1 20383 1h0cA 386 2.186e+01 c.67.1.3 83424 35c8H 218 2.226e+01 8fabA b.1.1.1 20297 b.1.1.2 21289 2wzpD 123 2.238e+01 1efaA 329 2.241e+01 1tlfA a.35.1.5 17106 c.93.1.1 35691 2nwqA 230 2.246e+01 3gi9H 218 2.247e+01 2cbzA 231 2.251e+01 3gybA 262 2.251e+01 2rspA 116 2.254e+01 2rspB b.50.1.1 26771 3clkA 252 2.255e+01 1zunB 395 2.275e+01 b.43.3.1 125677 b.44.1.1 125678 c.37.1.8 125679 2c4mA 789 2.295e+01 3bedA 133 2.315e+01 c.54.1.1 155183 1ydeA 251 2.334e+01 c.2.1.2 122980 2h0aA 259 2.335e+01 1j0dA 342 2.339e+01 c.79.1.1 83902 1c5cH 216 2.356e+01 1igtB b.1.1.1 20475 b.1.1.2 21439 1b43A 340 2.360e+01 1a76 a.60.7.1 18092 c.120.1.2 33362 1xkqA 273 2.369e+01 c.2.1.2 115417 3k4hA 283 2.380e+01 2pt7A 324 2.383e+01 c.37.1.11 149834 1gc1H 230 2.390e+01 1gc1H b.1.1.1 20265 b.1.1.2 21265 3b5gA 112 2.395e+01 1rifA 283 2.411e+01 c.37.1.23 97507 1y56A 485 2.433e+01 1a2yB 117 2.436e+01 1gc1H b.1.1.1 19927 3k3qA 138 2.471e+01 2oktA 343 2.488e+01 1pvxA 195 2.493e+01 1axkA b.29.1.11 24341 2ox7A 145 2.508e+01 b.172.1.1 149054 2ay1A 395 2.517e+01 1ajsA c.67.1.1 34357 2de3A 345 2.518e+01 1n4xH 121 2.519e+01 b.1.1.1 85324 1mjuH 213 2.534e+01 b.1.1.1 91302 b.1.1.2 91303 2qyzA 128 2.566e+01 2fvyA 306 2.568e+01 c.93.1.1 134227 2b3fA 393 2.586e+01 1bdb 268 2.614e+01 1bdb 2zjrT 85 2.623e+01 b.84.4.1 154573 1dfuP 95 2.635e+01 1dfuP b.53.1.1 26936 1ynaA 195 2.656e+01 b.29.1.11 24335 2pcjA 224 2.656e+01 1mvpA 113 2.671e+01 2rspB b.50.1.1 26775 1a4jB 218 2.692e+01 1igtB b.1.1.1 20233 b.1.1.2 21245 1q9rB 223 2.706e+01 b.1.1.1 96307 b.1.1.2 96308 1afvH 221 2.710e+01 1mfa b.1.1.1 20131 b.1.1.2 21161 1mqkH 124 2.769e+01 b.1.1.1 85053 1mba 147 2.772e+01 2fal 1nkoA 123 2.773e+01 b.1.1.1 85829 1qz9A 405 2.785e+01 c.67.1.3 96621 1bu8A 447 2.803e+01 1gpl b.12.1.2 23647 c.69.1.19 34795 2fepA 274 2.803e+01 1iy8A 259 2.805e+01 c.2.1.2 83774 1bqhG 123 2.837e+01 1cd8 b.1.1.1 19715 1qg8A 239 2.837e+01 1qg8A c.68.1.1 34505 1u0qA 126 2.842e+01 1upqA 108 2.849e+01 b.55.1.1 113392 1uyrA 699 2.878e+01 c.14.1.4 100188 c.14.1.4 100189 1xfpA 132 2.883e+01 b.1.1.1 109587 1rv0H 325 2.912e+01 b.19.1.2 97895 1rvtH 325 2.912e+01 b.19.1.2 97931 1txnA 260 2.912e+01 d.248.1.1 112779 1mlcB 219 2.914e+01 1igtB b.1.1.1 20053 b.1.1.2 21095 2eyuA 248 2.938e+01 1ybvA 271 2.951e+01 1ybvA c.2.1.2 29948 2pijA 60 2.960e+01 2pz4A 240 2.978e+01 1fp4A 468 2.982e+01 c.92.2.3 76187 1ycdA 238 2.984e+01 1pdoA 130 2.997e+01 c.54.1.1 33376 3jsjA 185 3.018e+01 1hw1A 227 3.022e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1e7wA 268 3.030e+01 c.2.1.2 59373 1nlbH 219 3.033e+01 b.1.1.1 80621 b.1.1.2 80622 1tvdA 117 3.050e+01 1tvdA b.1.1.1 20650 3hbmA 282 3.053e+01 2r5fA 219 3.055e+01 c.124.1.8 151590 2b4rO 335 3.060e+01 c.2.1.3 127845 d.81.1.1 127846 1geeA 262 3.062e+01 c.2.1.2 90509 3dhrA 142 3.085e+01 1p3dA 464 3.098e+01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1i52A 226 3.106e+01 1i52A c.68.1.13 61767 8abpA 306 3.108e+01 c.93.1.1 35647 1fhuA 299 3.109e+01 1fhuA c.1.11.2 29234 d.54.1.1 38878 2ff7A 244 3.114e+01 c.37.1.12 133377 2zatA 252 3.120e+01 2d27A 149 3.149e+01 d.52.10.1 146449 1ngzB 221 3.162e+01 b.1.1.1 80502 b.1.1.2 80503 3bj91 117 3.172e+01 2rjoA 323 3.180e+01 3k1aA 468 3.186e+01 3bq3A 251 3.192e+01 1y0uA 90 3.197e+01 a.4.5.5 116310 1xgkA 326 3.203e+01 c.2.1.2 115286 2rgyA 276 3.203e+01 1f5jA 200 3.213e+01 1axkA b.29.1.11 24342 3gvvA 357 3.225e+01 2j01Z 177 3.244e+01 b.53.1.1 145582 1cz4A 186 3.249e+01 1cz4A b.52.2.3 26934 d.31.1.1 38468 1bykA 256 3.260e+01 1bykA c.93.1.1 35706 1oaaA 260 3.279e+01 c.2.1.2 29829 1iyjB 592 3.293e+01 a.170.1.1 76948 a.171.1.1 76949 b.40.4.3 76950 b.40.4.3 76951 b.40.4.3 76952 2o8pA 221 3.310e+01 a.118.7.1 148679 1u9kA 111 3.323e+01 b.1.1.1 113244 3i3oA 283 3.336e+01 3kjxA 334 3.342e+01 3gw3A 358 3.344e+01 1g0oA 273 3.354e+01 1ybvA c.2.1.2 60181 1wsuA 125 3.354e+01 a.4.5.35 121245 a.4.5.35 121246 1zemA 261 3.363e+01 c.2.1.2 124984 1h1aA 192 3.376e+01 b.29.1.11 83450 1jeyA 494 3.384e+01 1jeqA b.131.1.1 90370 c.62.1.3 90371 1uluA 247 3.387e+01 c.2.1.2 113292 2bgkA 268 3.388e+01 c.2.1.2 128480 1efuA 364 3.389e+01 1efcA b.43.3.1 25682 b.44.1.1 25722 c.37.1.8 32115 1q1fA 149 3.426e+01 a.1.1.2 104476 2wy4A 140 3.443e+01 1ibjA 381 3.460e+01 1ibjA c.67.1.3 62162 3ijrA 282 3.490e+01 1ajsA 413 3.498e+01 1ajsA c.67.1.1 34276 1pz5B 221 3.499e+01 b.1.1.1 95403 b.1.1.2 95404 3gbvA 290 3.500e+01 3i1jA 248 3.527e+01 1k8yB 391 3.566e+01 c.79.1.1 72184 2r7aA 256 3.584e+01 2fz4A 207 3.600e+01 c.37.1.19 134419 1mvfA 127 3.610e+01 b.1.1.1 85141 1gpl 433 3.632e+01 1gpl 2tct 199 3.650e+01 2tct 1xttA 216 3.659e+01 c.61.1.1 122300 2fal 147 3.708e+01 2fal 3iahA 254 3.718e+01 1ad9B 220 3.739e+01 1gc1H b.1.1.1 20215 b.1.1.2 21227 3cgxA 232 3.794e+01 1wejH 224 3.806e+01 1igtB b.1.1.1 20361 b.1.1.2 21353 1r0dA 195 3.809e+01 a.216.1.1 104715 1y5mA 266 3.825e+01 c.2.1.2 122645 2dr1A 382 3.835e+01 3hn7A 481 3.849e+01 1xu9A 270 3.893e+01 c.2.1.2 116052 1nfdA 204 3.899e+01 1tcrA b.1.1.1 20612 b.1.1.2 21550 2cxcA 139 3.901e+01 1cs1A 385 3.906e+01 1ibjA c.67.1.3 34399 3e4rA 292 3.909e+01 3b82A 824 3.916e+01 2nq2C 252 3.934e+01 1h1lA 479 3.950e+01 c.92.2.3 70851 1t2jA 117 3.951e+01 1ruyH 325 3.952e+01 b.19.1.2 97883 1p5fA 187 3.957e+01 c.23.16.2 94142 2r19A 136 3.982e+01 3d02A 301 3.996e+01