PFRMAT SS TARGET T0528 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0528.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 1190 METHOD MODEL 1 M H 0.751 T H 0.937 A H 0.925 T H 0.891 A H 0.912 V H 0.909 A H 0.921 L H 0.914 A H 0.870 T H 0.865 T H 0.868 A H 0.828 V H 0.743 H H 0.663 A H 0.514 A T 0.396 D C 0.535 D C 0.435 L E 0.745 K E 0.878 I E 0.951 A E 0.955 L E 0.956 I E 0.879 Y E 0.622 G T 0.403 K T 0.504 T T 0.464 G T 0.444 P H 0.414 L H 0.639 E H 0.714 A H 0.765 Y H 0.833 A H 0.582 K H 0.619 Q H 0.678 T H 0.917 E H 0.971 T H 0.981 G H 0.988 L H 0.997 M H 0.998 M H 0.998 G H 0.998 L H 0.997 E H 0.996 Y H 0.992 A H 0.975 T H 0.925 K H 0.760 G H 0.476 T C 0.478 M C 0.446 T T 0.435 L T 0.654 D T 0.823 G T 0.835 R E 0.559 K E 0.894 I E 0.960 V E 0.984 V E 0.984 I E 0.965 T E 0.895 K E 0.597 D T 0.471 D T 0.872 Q T 0.871 S T 0.785 K C 0.633 P H 0.925 D H 0.973 L H 0.988 S H 0.991 K H 0.999 A H 0.999 A H 0.999 L H 0.999 A H 0.999 E H 0.997 A H 0.994 Y H 0.988 Q H 0.964 D H 0.898 D H 0.495 G C 0.752 A C 0.612 D E 0.766 I E 0.981 A E 0.979 I E 0.960 G E 0.796 T T 0.385 S T 0.574 S T 0.576 S H 0.409 A H 0.780 A H 0.870 A H 0.905 L H 0.939 A H 0.962 D H 0.967 L H 0.976 P H 0.983 V H 0.984 A H 0.980 E H 0.975 E H 0.955 N H 0.808 K C 0.902 K C 0.837 I E 0.521 L E 0.894 I E 0.934 V E 0.833 E E 0.601 P C 0.418 A T 0.451 V C 0.475 A T 0.468 D T 0.429 Q T 0.399 I T 0.385 T T 0.334 G T 0.419 E T 0.451 K T 0.461 W T 0.399 N T 0.786 R T 0.865 Y T 0.778 I E 0.702 F E 0.871 R E 0.875 T E 0.701 G C 0.487 R C 0.627 N C 0.742 S H 0.769 S H 0.957 Q H 0.957 D H 0.968 A H 0.975 I H 0.977 S H 0.971 N H 0.982 A H 0.987 V H 0.985 A H 0.973 I H 0.967 G H 0.940 K H 0.623 Q C 0.483 G T 0.496 V C 0.401 T E 0.875 I E 0.988 A E 0.994 T E 0.986 L E 0.901 A E 0.412 Q T 0.683 D T 0.744 Y T 0.729 A H 0.491 F H 0.635 G H 0.694 R H 0.834 D H 0.866 G H 0.938 V H 0.979 A H 0.985 A H 0.993 F H 0.996 K H 0.997 E H 0.996 A H 0.995 L H 0.990 A H 0.982 K H 0.948 T H 0.701 G C 0.925 A C 0.818 T E 0.720 L E 0.962 A E 0.962 T E 0.927 E E 0.899 E E 0.849 Y E 0.775 V E 0.518 P T 0.461 T T 0.701 T T 0.738 T T 0.578 T C 0.313 D H 0.361 F H 0.830 T H 0.863 A H 0.913 V H 0.920 G H 0.897 Q H 0.901 R H 0.918 L H 0.922 F H 0.883 D H 0.687 A H 0.543 L H 0.483 K T 0.404 D T 0.386 K T 0.842 P T 0.864 G T 0.753 K E 0.972 K E 0.995 I E 0.993 I E 0.968 W E 0.656 V C 0.406 I C 0.585 W C 0.465 A T 0.463 G H 0.382 G H 0.833 G H 0.959 D H 0.973 P H 0.988 L H 0.987 T H 0.989 K H 0.993 L H 0.992 Q H 0.975 D H 0.951 M H 0.840 D C 0.886 P C 0.806 K C 0.671 R C 0.330 Y E 0.484 G E 0.731 I E 0.747 E E 0.625 L E 0.466 S E 0.308 T T 0.352 G T 0.362 G C 0.416 N C 0.507 I H 0.749 L H 0.870 P H 0.900 A H 0.881 L H 0.865 A H 0.856 A H 0.756 Y H 0.580 K H 0.479 R H 0.395 L T 0.403 P T 0.445 G T 0.467 M E 0.361 E E 0.731 G E 0.852 A E 0.771 T E 0.606 Y E 0.456 Y C 0.338 Y C 0.339 Y T 0.363 D T 0.431 I T 0.571 P T 0.618 K T 0.540 N T 0.451 P H 0.731 I H 0.781 N H 0.873 E H 0.983 W H 0.985 L H 0.990 V H 0.996 T H 0.995 E H 0.997 H H 0.994 Q H 0.981 K H 0.953 R H 0.898 F H 0.748 N C 0.618 A C 0.534 P C 0.503 P C 0.417 D C 0.473 F H 0.639 F H 0.778 T H 0.874 A H 0.938 G H 0.940 G H 0.982 F H 0.991 S H 0.993 A H 0.997 A H 0.999 M H 0.999 A H 0.998 V H 0.997 V H 0.996 T H 0.997 A H 0.996 V H 0.984 Q H 0.958 K H 0.905 A H 0.675 K C 0.745 S C 0.545 T C 0.556 D C 0.517 T H 0.848 E H 0.940 K H 0.973 L H 0.986 I H 0.991 A H 0.983 A H 0.982 M H 0.967 E H 0.941 G H 0.468 M C 0.670 E C 0.643 F C 0.356 D C 0.439 T T 0.435 P T 0.495 K T 0.492 G T 0.504 K E 0.474 M E 0.860 V E 0.931 F E 0.934 R E 0.784 K T 0.830 E T 0.902 D T 0.930 H T 0.767 Q E 0.518 A E 0.745 L E 0.681 Q E 0.684 S E 0.675 M E 0.878 Y E 0.970 H E 0.987 F E 0.979 K E 0.971 V E 0.920 K E 0.769 V T 0.493 D T 0.794 P T 0.803 A T 0.664 V C 0.431 A C 0.456 W E 0.463 A E 0.451 V E 0.511 L E 0.392 E E 0.492 P E 0.476 V E 0.456 R E 0.422 E E 0.525 L C 0.431 K C 0.589 I G 0.460 E G 0.739 E G 0.779 M T 0.336 N C 0.512 I C 0.619 P C 0.500 I T 0.539 K T 0.440 N T 0.465 K C 0.590 K C 0.820 END