PFRMAT SS TARGET T0528 AUTHOR SAM-T02-server METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0528.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 1190 METHOD MODEL 1 M H 0.844 T H 0.919 A H 0.909 T H 0.913 A H 0.898 V H 0.884 A H 0.813 L H 0.689 A H 0.519 T H 0.460 T H 0.405 A H 0.380 V H 0.338 H T 0.259 A T 0.393 A T 0.354 D C 0.369 D C 0.428 L E 0.799 K E 0.948 I E 0.955 A E 0.929 L E 0.935 I E 0.807 Y E 0.574 G E 0.339 K T 0.270 T S 0.321 G S 0.340 P C 0.269 L H 0.361 E H 0.428 A H 0.353 Y H 0.309 A H 0.315 K H 0.723 Q H 0.814 T H 0.959 E H 0.985 T H 0.990 G H 0.991 L H 0.996 M H 0.996 M H 0.995 G H 0.995 L H 0.996 E H 0.993 Y H 0.983 A H 0.969 T H 0.918 K H 0.754 G T 0.670 T T 0.836 M C 0.572 T C 0.485 L C 0.425 D T 0.534 G T 0.441 R C 0.630 K E 0.701 I E 0.940 V E 0.987 V E 0.979 I E 0.961 T E 0.851 K E 0.566 D C 0.621 D T 0.438 Q T 0.703 S S 0.525 K C 0.632 P H 0.921 D H 0.982 L H 0.992 S H 0.997 K H 0.997 A H 0.996 A H 0.995 L H 0.993 A H 0.990 E H 0.982 A H 0.973 Y H 0.959 Q H 0.876 D H 0.512 D T 0.776 G T 0.514 A C 0.717 D E 0.806 I E 0.985 A E 0.993 I E 0.979 G E 0.792 T C 0.463 S C 0.303 S S 0.478 S S 0.405 A H 0.611 A H 0.650 A H 0.794 L H 0.854 A H 0.858 D H 0.932 L H 0.974 P H 0.988 V H 0.995 A H 0.994 E H 0.977 E H 0.858 N T 0.721 K T 0.878 K C 0.874 I C 0.593 L E 0.766 I E 0.901 V E 0.820 E E 0.527 P C 0.403 A C 0.355 V C 0.388 A C 0.312 D C 0.277 Q T 0.216 I T 0.209 T C 0.301 G T 0.242 E T 0.351 K T 0.428 W C 0.374 N C 0.649 R T 0.437 Y E 0.349 I E 0.888 F E 0.960 R E 0.935 T E 0.750 G C 0.434 R C 0.407 N C 0.560 S H 0.459 S H 0.747 Q H 0.792 D H 0.835 A H 0.911 I H 0.963 S H 0.974 N H 0.974 A H 0.973 V H 0.970 A H 0.951 I H 0.906 G H 0.718 K T 0.565 Q T 0.567 G C 0.919 V C 0.682 T E 0.823 I E 0.986 A E 0.996 T E 0.990 L E 0.910 A E 0.512 Q C 0.452 D C 0.386 Y S 0.293 A T 0.286 F T 0.301 G H 0.450 R H 0.890 D H 0.947 G H 0.973 V H 0.990 A H 0.992 A H 0.993 F H 0.996 K H 0.997 E H 0.995 A H 0.993 L H 0.992 A H 0.971 K H 0.826 T T 0.862 G T 0.967 A C 0.857 T E 0.774 L E 0.872 A E 0.890 T E 0.867 E E 0.888 E E 0.862 Y E 0.826 V E 0.575 P C 0.615 T T 0.425 T T 0.496 T C 0.297 T C 0.371 D C 0.563 F H 0.786 T H 0.931 A H 0.953 V H 0.971 G H 0.958 Q H 0.879 R H 0.851 L H 0.850 F H 0.844 D H 0.849 A H 0.777 L H 0.542 K T 0.399 D H 0.344 K C 0.521 P C 0.925 G S 0.517 K E 0.993 K E 0.999 I E 0.998 I E 0.980 W E 0.692 V C 0.463 I C 0.515 W C 0.401 A H 0.351 G H 0.516 G H 0.891 G H 0.970 D H 0.985 P H 0.994 L H 0.997 T H 0.997 K H 0.997 L H 0.997 Q H 0.991 D H 0.941 M T 0.610 D T 0.875 P C 0.918 K C 0.760 R C 0.441 Y E 0.403 G E 0.775 I E 0.823 E E 0.701 L E 0.593 S E 0.387 T C 0.243 G C 0.293 G C 0.369 N C 0.542 I H 0.838 L H 0.898 P H 0.915 A H 0.931 L H 0.903 A H 0.846 A H 0.736 Y H 0.561 K H 0.551 R H 0.498 L H 0.303 P T 0.432 G T 0.369 M E 0.513 E E 0.801 G E 0.828 A E 0.673 T E 0.421 Y C 0.376 Y C 0.398 Y C 0.451 Y C 0.340 D C 0.285 I C 0.316 P T 0.360 K S 0.441 N S 0.526 P H 0.758 I H 0.748 N H 0.919 E H 0.984 W H 0.990 L H 0.994 V H 0.996 T H 0.997 E H 0.996 H H 0.996 Q H 0.993 K H 0.974 R H 0.938 F H 0.593 N T 0.451 A C 0.585 P C 0.802 P C 0.483 D C 0.431 F H 0.367 F H 0.677 T H 0.810 A H 0.954 G H 0.968 G H 0.990 F H 0.995 S H 0.997 A H 0.998 A H 0.999 M H 0.999 A H 0.999 V H 0.999 V H 0.999 T H 0.997 A H 0.996 V H 0.996 Q H 0.986 K H 0.910 A H 0.559 K T 0.516 S C 0.573 T C 0.524 D C 0.761 T H 0.859 E H 0.982 K H 0.982 L H 0.990 I H 0.989 A H 0.977 A H 0.960 M H 0.926 E H 0.613 G T 0.809 M C 0.574 E C 0.671 F C 0.527 D C 0.454 T C 0.490 P T 0.350 K T 0.370 G S 0.510 K C 0.587 M E 0.787 V E 0.907 F E 0.902 R E 0.725 K C 0.330 E T 0.855 D T 0.818 H C 0.368 Q C 0.431 A E 0.419 L E 0.518 Q E 0.453 S E 0.561 M E 0.830 Y E 0.966 H E 0.989 F E 0.986 K E 0.980 V E 0.906 K E 0.750 V C 0.369 D T 0.449 P T 0.473 A S 0.466 V C 0.427 A C 0.505 W E 0.619 A E 0.697 V E 0.597 L E 0.650 E E 0.680 P E 0.698 V E 0.714 R E 0.582 E E 0.584 L C 0.480 K C 0.715 I G 0.392 E G 0.477 E G 0.512 M C 0.261 N C 0.441 I C 0.567 P C 0.665 I G 0.349 K G 0.405 N G 0.338 K C 0.507 K C 0.994 END