# List of top-scoring protein chains for T0523.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 1.01e-07 3ewkA 227 2.76e-07 2gj3A 120 1.50e-06 3bwlA 126 1.33e-05 2pr5A 132 2.38e-05 1lswA 131 4.06e-05 d.110.3.2 78181 1ew0A 130 4.07e-05 d.110.3.2 40905 1y28A 131 4.75e-05 d.110.3.2 116399 2cmnA 130 5.17e-05 3luqA 114 8.15e-05 2r78A 117 8.69e-05 2vv6A 119 0.000246 1v9yA 167 0.000262 d.110.3.2 108454 1n9lA 109 0.000265 d.110.3.6 85468 1s67L 119 0.000270 d.110.3.2 105303 2v0uA 146 0.000360 2v1bA 144 0.000401 1bywA 110 0.000445 d.110.3.6 40912 1xj3A 116 0.000697 d.110.3.2 122026 2wkrA 332 0.000734 2z6dA 130 0.000753 2wkqA 332 0.000759 2wkpA 332 0.000768 3f1pA 117 0.000869 1p97A 114 0.000899 d.110.3.7 94382 2a24A 107 0.000916 3eehA 125 0.001035 2z6cA 129 0.001055 3a0rA 349 0.002545 3fc7A 125 0.004635 1jnuA 104 0.007575 d.110.3.6 71762 2b02A 119 0.01979 2a24B 108 0.02052 1x0oA 119 0.02077 3is2A 154 0.02261 2pdrA 149 0.02262 3hjkA 154 0.02279 3d72A 149 0.02343 2pd8A 149 0.02406 3f1pB 121 0.02641 3a0sA 96 0.02745 3a0vA 96 0.02906 3hjiA 154 0.03055 2k7sA 119 0.04107 3b33A 115 0.04314 3h9wA 115 0.04360 1ll8A 114 0.07134 d.110.3.5 78089 1otdA 125 0.1095 d.110.3.1 93513 2w0nA 118 0.1119 2jheA 190 0.2116 1gsvA 125 0.2549 d.110.3.1 65537 1ot6A 125 0.2577 d.110.3.1 93504 1f9iA 125 0.2943 d.110.3.1 40898 1d7eA 122 0.3223 d.110.3.1 40900 1nwzA 125 0.3362 d.110.3.1 86370 3icyA 118 0.3420 2i9vA 125 0.3428 1odvA 100 0.3644 d.110.3.1 86887 2d02A 125 0.4049 3fg8A 118 0.4346 1f98A 125 0.4498 d.110.3.1 40899 1xfnA 113 0.4828 d.110.3.1 121934 3caxA 369 0.5925 2qkpA 151 0.6748 1gsxA 125 0.7747 d.110.3.1 65539 3gecA 312 0.8832 1wa9A 368 0.8861 1gswA 125 1.052 d.110.3.1 65538 2vlgA 111 1.811 3gdiA 309 4.362 1mzuA 129 10.59 d.110.3.1 79714 2veaA 520 27.62 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 2h01A 192 46.64 c.47.1.10 135928 1u1gA 256 64.34 c.56.2.1 119445 1rxyA 253 66.01 c.56.2.1 98065 1fgmA 839 67.92 a.119.1.1,b.12.1.1 65009,65010 1fgoA 839 68.97 a.119.1.1,b.12.1.1 59824,59825 1ygeA 839 70.34 a.119.1.1,b.12.1.1 19234,23634 1fgqA 839 70.42 a.119.1.1,b.12.1.1 59826,59827 3bndA 839 70.66 a.119.1.1,b.12.1.1 155434,155435 3bneA 839 70.67 a.119.1.1,b.12.1.1 155436,155437 3bncA 839 70.67 a.119.1.1,b.12.1.1 155432,155433 1y4kA 839 70.73 a.119.1.1,b.12.1.1 122622,122623 3bnbA 839 70.79 a.119.1.1,b.12.1.1 155430,155431 1fgrA 839 71.18 a.119.1.1,b.12.1.1 59828,59829 1fgtA 839 73.59 a.119.1.1,b.12.1.1 59830,59831 2flqA 375 74.97 1zyeA 220 82.54 c.47.1.10 125817 3f0wA 168 83.04 2e70A 71 83.41 2q18X 293 84.64