# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lyxA	124	1.85e-15		
2gj3A	120	1.95e-15		
2v0uA	146	2.22e-15		
2z6cA	129	2.40e-15		
2wkqA	332	1.36e-14		
2wkpA	332	1.41e-14		
2wkrA	332	1.92e-14		
3ewkA	227	3.98e-14		
2pr5A	132	4.20e-14		
3h9wA	115	4.66e-14		
1x0oA	119	5.52e-14		
1n9lA	109	1.01e-13	d.110.3.6	85468
1p97A	114	1.24e-13	d.110.3.7	94382
3icyA	118	1.33e-13		
3luqA	114	1.33e-13		
3bwlA	126	1.67e-13		
3f1pA	117	1.97e-13		
3f1pB	121	2.35e-13		
2pdrA	149	2.41e-13		
2r78A	117	4.60e-13		
2b02A	119	6.09e-13		
2pd8A	149	6.13e-13		
3d72A	149	8.75e-13		
3fc7A	125	9.16e-13		
3eehA	125	1.46e-12		
1lswA	131	1.77e-12	d.110.3.2	78181
1jnuA	104	2.63e-12	d.110.3.6	71762
3gdiA	309	2.94e-12		
1bywA	110	3.85e-12	d.110.3.6	40912
1ew0A	130	4.01e-12	d.110.3.2	40905
1v9yA	167	4.12e-12	d.110.3.2	108454
1drmA	131	6.48e-12	d.110.3.2	40908
1xj4A	119	9.54e-12	d.110.3.2	122027
3caxA	369	1.17e-11		
3fg8A	118	1.92e-11		
3b33A	115	2.07e-11		
2vv6A	119	2.10e-11		
3a0sA	96	2.67e-11		
3a0vA	96	2.94e-11		
1w25A	459	9.11e-11	c.23.1.1,c.23.1.1,d.58.29.2	114090,114091,114092
1ll8A	114	1.06e-10	d.110.3.5	78089
2jheA	190	1.60e-10		
2qkpA	151	2.87e-09		
3ezuA	342	3.11e-09		
2vlgA	111	3.74e-09		
3pyp	125	0.007679		
1nwzA	125	0.008647	d.110.3.1	86370
1mzuA	129	0.009476	d.110.3.1	79714
2o9cA	342	1.017	d.110.2.1,d.110.3.9	148684,148685
2oolA	337	2.290	d.110.2.1,d.110.3.9	148932,148933
2qhkA	174	2.663		
3fosA	214	2.690		
3c8cA	240	4.085		
2veaA	520	4.768	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
1ztuA	341	5.923	d.110.2.1,d.110.3.9	146024,146025
1oj5A	132	8.508	d.110.3.8	93087
2eg2A	112	10.79		
3by9A	260	19.16		
3dmaA	343	23.81		
3bzqA	114	23.82		
2o66A	135	27.56		
1tvlA	454	42.79	c.1.16.4	107366
2gw8A	114	48.33		
3a2vA	249	50.54		
3ighX	486	55.00		
3id4A	93	55.32		
1nwwA	149	56.66	d.17.4.8	86306
1uc8A	280	57.13	c.30.1.6,d.142.1.7	99165,99166
2r8rA	228	60.09		
1jg5A	83	60.22	d.205.1.1	66666
3by8A	142	60.57	d.110.6.1	155722
3bwhA	245	69.28		
3id2A	90	69.60		
1uf5A	303	70.04	d.160.1.2	107808
1wjxA	122	72.24	b.111.1.1	114716
1gnkA	112	73.67	d.58.5.1	39073
1xzwA	426	79.92	b.1.12.1,d.159.1.1	116270,116271
3lheA	143	80.37		
3g3eA	351	82.79		
1t9mA	214	87.44	b.45.1.1	112364
1yw1A	442	87.94	c.1.16.4	124130
2c0dA	221	88.96		
3e1eA	141	89.10