# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lyxA	124	1.18e-15		
2gj3A	120	1.43e-15		
2z6cA	129	2.26e-15		
2v0uA	146	3.08e-15		
2wkqA	332	1.17e-14		
2wkpA	332	1.59e-14		
2wkrA	332	1.88e-14		
3h9wA	115	2.61e-14		
1x0oA	119	3.90e-14		
2pr5A	132	3.97e-14		
3ewkA	227	4.97e-14		
1n9lA	109	7.34e-14	d.110.3.6	85468
3f1pA	117	8.72e-14		
3luqA	114	1.11e-13		
3icyA	118	1.48e-13		
1p97A	114	1.60e-13	d.110.3.7	94382
3bwlA	126	1.62e-13		
3f1pB	121	1.70e-13		
2pdrA	149	2.94e-13		
2b02A	119	4.89e-13		
2pd8A	149	5.86e-13		
2r78A	117	6.37e-13		
3d72A	149	8.68e-13		
1lswA	131	8.77e-13	d.110.3.2	78181
3eehA	125	9.02e-13		
3fc7A	125	1.36e-12		
1ew0A	130	1.94e-12	d.110.3.2	40905
1jnuA	104	2.22e-12	d.110.3.6	71762
1bywA	110	2.80e-12	d.110.3.6	40912
1v9yA	167	2.88e-12	d.110.3.2	108454
1drmA	131	2.89e-12	d.110.3.2	40908
3gdiA	309	3.20e-12		
1xj4A	119	6.14e-12	d.110.3.2	122027
2vv6A	119	8.83e-12		
3caxA	369	1.46e-11		
3b33A	115	1.91e-11		
3fg8A	118	2.45e-11		
3a0sA	96	2.66e-11		
3a0vA	96	2.94e-11		
1ll8A	114	2.70e-10	d.110.3.5	78089
2jheA	190	3.82e-10		
1w25A	459	8.28e-10	c.23.1.1,c.23.1.1,d.58.29.2	114090,114091,114092
3ezuA	342	2.42e-09		
2qkpA	151	2.72e-09		
2vlgA	111	3.18e-09		
1nwzA	125	0.009063	d.110.3.1	86370
3pyp	125	0.009063		
1mzuA	129	0.01444	d.110.3.1	79714
3fosA	214	1.106		
2oolA	337	1.590	d.110.2.1,d.110.3.9	148932,148933
2o9cA	342	1.827	d.110.2.1,d.110.3.9	148684,148685
2qhkA	174	2.714		
3c8cA	240	4.223		
1ztuA	341	7.977	d.110.2.1,d.110.3.9	146024,146025
1oj5A	132	10.18	d.110.3.8	93087
2veaA	520	22.02	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
3a2vA	249	22.91		
2eg2A	112	25.71		
3by9A	260	27.70		
2c0dA	221	31.37		
3by8A	142	37.01	d.110.6.1	155722
1okgA	373	47.54	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1jg5A	83	50.02	d.205.1.1	66666
3bwhA	245	51.62		
3id4A	93	52.71		
2cx4A	164	57.51	c.47.1.10	130973
3lheA	143	60.02		
3dmaA	343	60.05		
3ighX	486	60.41		
1nwwA	149	60.61	d.17.4.8	86306
1xvwA	160	62.67	c.47.1.10	122387
1uc8A	280	64.69	c.30.1.6,d.142.1.7	99165,99166
1uf5A	303	64.92	d.160.1.2	107808
1yexA	186	65.67	c.47.1.10	123021
2pn8A	211	66.51		
2o66A	135	67.38		
2zctA	249	67.77	c.47.1.10	154343
3bzqA	114	69.94		
2w1rA	123	73.95		
3id2A	90	80.18		
1wjxA	122	89.22	b.111.1.1	114716