# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 1.12e-22 2gj3A 120 1.79e-22 2v0uA 146 6.27e-22 2z6cA 129 9.86e-22 2wkqA 332 7.60e-21 1x0oA 119 1.07e-20 2wkpA 332 1.14e-20 3h9wA 115 1.60e-20 2wkrA 332 1.62e-20 2pr5A 132 3.78e-20 1n9lA 109 5.48e-20 d.110.3.6 85468 3f1pA 117 6.09e-20 1p97A 114 9.49e-20 d.110.3.7 94382 3ewkA 227 1.49e-19 3f1pB 121 2.04e-19 3luqA 114 4.14e-19 3bwlA 126 5.58e-19 2pdrA 149 6.20e-19 2b02A 119 7.26e-19 3icyA 118 1.52e-18 1lswA 131 1.61e-18 d.110.3.2 78181 2pd8A 149 1.87e-18 3d72A 149 2.48e-18 3gdiA 309 2.86e-18 3eehA 125 3.75e-18 2r78A 117 4.06e-18 1bywA 110 5.75e-18 d.110.3.6 40912 1drmA 131 6.01e-18 d.110.3.2 40908 1ew0A 130 6.71e-18 d.110.3.2 40905 1v9yA 167 9.12e-18 d.110.3.2 108454 1jnuA 104 9.17e-18 d.110.3.6 71762 3fc7A 125 1.64e-17 1xj4A 119 2.79e-17 d.110.3.2 122027 2vv6A 119 3.17e-17 3fg8A 118 1.18e-16 3b33A 115 1.41e-16 3caxA 369 6.17e-16 3a0sA 96 8.46e-16 3a0vA 96 9.50e-16 1ll8A 114 1.95e-15 d.110.3.5 78089 2jheA 190 2.68e-14 1w25A 459 1.39e-13 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2vlgA 111 2.23e-13 3ezuA 342 2.31e-13 2qkpA 151 1.07e-12 3pyp 125 6.44e-05 1nwzA 125 6.53e-05 d.110.3.1 86370 1mzuA 129 0.000129 d.110.3.1 79714 2o9cA 342 0.006712 d.110.2.1,d.110.3.9 148684,148685 2oolA 337 0.009300 d.110.2.1,d.110.3.9 148932,148933 1ztuA 341 0.07289 d.110.2.1,d.110.3.9 146024,146025 2veaA 520 0.07573 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 3fosA 214 0.1605 2qhkA 174 0.5104 3c8cA 240 1.590 1oj5A 132 1.707 d.110.3.8 93087 2hzqA 174 2.615 2eg2A 112 3.927 3by9A 260 6.352 1jg5A 83 7.397 d.205.1.1 66666 2w1rA 123 10.60 3bwhA 245 11.86 1ocvA 125 12.46 d.17.4.3 86810 1vqoK 132 12.74 b.39.1.1 120372 3ighX 486 14.34 1whiA 122 14.48 b.39.1.1 24810 1whi 122 14.61 2p7jA 287 16.51 d.110.6.2,d.110.6.2 149287,149288 2cx4A 164 16.94 c.47.1.10 130973 2ct8A 497 17.43 3hkxA 283 17.71 3e5zA 296 17.94 2gw8A 114 19.38 3bzqA 114 19.65 3a2vA 249 23.44 2oqaA 241 23.96 2zc3A 168 24.71 1xvwA 160 24.94 c.47.1.10 122387 2o66A 135 25.36 1qzpA 68 26.23 a.14.1.1 96654 1yu5X 67 29.31 a.14.1.1 124039 3dmaA 343 31.21 1e8nA 710 32.74 b.69.7.1,c.69.1.4 27675,34643 3by8A 142 32.89 d.110.6.1 155722 1li5A 461 33.41 a.27.1.1,c.26.1.1 73912,73913 3hvvA 167 33.79 2kjkA 100 34.40 1wosA 364 34.53 b.44.2.1,d.250.1.1 109468,109469 1is8K 84 35.02 d.205.1.1 66331 1ujsA 88 36.37 a.14.1.1 99467 1t9mA 214 38.28 b.45.1.1 112364 1yu8X 67 38.47 a.14.1.1 124044 3lheA 143 38.62 2x7nC 132 39.82 1v5tA 90 41.02 d.15.1.1 108385 1nwwA 149 41.77 d.17.4.8 86306 3id4A 93 43.98 1ci9A 392 45.35 e.3.1.1 64767 1uf5A 303 45.45 d.160.1.2 107808 2wnpF 217 46.30 3gkmA 163 47.01 2hvwA 184 47.81 2igvA 173 48.77 b.62.1.1 147667 1yexA 186 48.93 c.47.1.10 123021 2k6mS 67 49.78 1g79A 218 51.53 b.45.1.1 25752 1gnkA 112 52.51 d.58.5.1 39073 2nsfA 261 53.04 a.213.1.4,d.106.1.2 148386,148387 2dyuA 334 53.76 1okgA 373 55.06 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1undA 37 55.43 a.14.1.1 107966 3gkkA 163 55.48 2vu1A 392 56.26 1bt0A 76 56.65 d.15.1.1 37607 1bccF 109 56.74 f.27.1.1 43700 1ldnA 316 57.89 c.2.1.5,d.162.1.1 30166,42133 2zpmA 91 57.96 3gknA 163 58.32 1zsxA 347 58.96 2pn8A 211 59.03 1x8qA 184 59.53 b.60.1.1 114966 3hwuA 147 61.31 1wjxA 122 61.39 b.111.1.1 114716 2kr5A 89 62.47 2ywnA 157 62.91 3iraA 173 66.38 1wl4A 397 67.42 3id3A 89 69.80 3bneA 839 70.35 a.119.1.1,b.12.1.1 155436,155437 1k8hA 133 70.93 b.111.1.1 72176 2a2lA 145 71.30 d.110.9.1 126035 2z2mA 168 71.69 2zdhA 319 71.76 1bx7A 55 73.55 g.3.15.1 44355 1b59A 370 73.77 a.4.5.25,d.127.1.1 16225,41162 1zmaA 118 74.06 c.47.1.1 125354 1uncA 36 74.62 a.14.1.1 107965 1h2wA 710 75.28 b.69.7.1,c.69.1.4 76596,76597 2nqwA 93 76.61 d.145.1.4 148346 1cqkA 101 77.05 b.1.1.2 21547 1wggA 96 79.04 d.15.1.1 114612 1m3kA 392 81.52 c.95.1.1,c.95.1.1 78565,78566 2vb1A 129 81.73 d.2.1.2 152871 1wy3A 35 82.35 2pii 112 82.65 2w1vA 276 82.65 2uxyA 341 83.50 3htnA 149 84.05 3g4eA 297 85.67 3c2uA 538 86.75 1l1oC 181 88.27 b.40.4.3 73480 3cnvA 162 88.51 d.190.1.2 156844 1a58A 177 89.79 b.62.1.1 27495