# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gj3A 120 9.29e-15 3lyxA 124 9.44e-15 2z6cA 129 1.38e-14 2v0uA 146 1.52e-14 2wkqA 332 6.27e-14 2wkpA 332 9.59e-14 1x0oA 119 9.63e-14 2wkrA 332 1.01e-13 3h9wA 115 1.20e-13 2pr5A 132 2.63e-13 3ewkA 227 2.92e-13 3icyA 118 3.82e-13 3f1pA 117 3.92e-13 3bwlA 126 4.08e-13 1n9lA 109 4.70e-13 d.110.3.6 85468 3luqA 114 5.58e-13 1p97A 114 7.11e-13 d.110.3.7 94382 3f1pB 121 9.90e-13 2r78A 117 1.09e-12 2pdrA 149 1.70e-12 2b02A 119 2.10e-12 2pd8A 149 2.91e-12 3eehA 125 3.45e-12 3d72A 149 3.52e-12 3fc7A 125 4.40e-12 1lswA 131 5.78e-12 d.110.3.2 78181 1v9yA 167 1.12e-11 d.110.3.2 108454 1ew0A 130 1.20e-11 d.110.3.2 40905 1bywA 110 1.22e-11 d.110.3.6 40912 3gdiA 309 1.23e-11 1drmA 131 1.92e-11 d.110.3.2 40908 1jnuA 104 2.26e-11 d.110.3.6 71762 1xj4A 119 2.63e-11 d.110.3.2 122027 3fg8A 118 3.17e-11 3b33A 115 3.35e-11 2vv6A 119 4.16e-11 3caxA 369 5.10e-11 3a0sA 96 7.63e-11 3a0vA 96 9.43e-11 1w25A 459 1.70e-10 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2jheA 190 4.76e-10 1ll8A 114 5.86e-10 d.110.3.5 78089 3ezuA 342 9.62e-10 2qkpA 151 7.00e-09 2vlgA 111 7.58e-09 1nwzA 125 0.01583 d.110.3.1 86370 3pyp 125 0.01604 1mzuA 129 0.02056 d.110.3.1 79714 2o9cA 342 0.3228 d.110.2.1,d.110.3.9 148684,148685 2oolA 337 1.304 d.110.2.1,d.110.3.9 148932,148933 1ztuA 341 1.846 d.110.2.1,d.110.3.9 146024,146025 3fosA 214 2.732 2veaA 520 3.224 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 2qhkA 174 3.589 3c8cA 240 5.075 2eg2A 112 10.73 2hzqA 174 11.28 1oj5A 132 14.94 d.110.3.8 93087 3bzqA 114 16.77 2o66A 135 21.34 2cx4A 164 24.58 c.47.1.10 130973 3a2vA 249 27.14 1lyqA 104 27.36 b.1.18.17 78302 1x8qA 184 28.79 b.60.1.1 114966 1nwwA 149 29.14 d.17.4.8 86306 3dmaA 343 30.08 2w1rA 123 30.15 3id4A 93 35.54 3by9A 260 40.83 2gw8A 114 41.36 3e5zA 296 41.84 2p7jA 287 47.58 d.110.6.2,d.110.6.2 149287,149288 3ighX 486 49.63 2a2lA 145 50.01 d.110.9.1 126035 3id2A 90 50.09 1jg5A 83 50.19 d.205.1.1 66666 1whiA 122 51.66 b.39.1.1 24810 1ocvA 125 54.34 d.17.4.3 86810 1xvwA 160 61.02 c.47.1.10 122387 1uc8A 280 61.48 c.30.1.6,d.142.1.7 99165,99166 1e8nA 710 61.63 b.69.7.1,c.69.1.4 27675,34643 1vqoK 132 61.78 b.39.1.1 120372 3bwhA 245 63.83 1whi 122 65.15 1wosA 364 68.04 b.44.2.1,d.250.1.1 109468,109469 2c0dA 221 68.80 1auvA 311 71.07 c.30.1.5,d.142.1.3 31723,41558 2zpmA 91 73.98 2vzwA 149 77.16 1gnkA 112 78.19 d.58.5.1 39073 2qguA 211 79.60 3lheA 143 80.09 1wjxA 122 81.96 b.111.1.1 114716 1tvlA 454 82.90 c.1.16.4 107366 2fk4A 75 83.34 g.90.1.1 147040 1is8K 84 86.67 d.205.1.1 66331 1rie 129 88.67