# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gj3A	120	1.28e-14		
3lyxA	124	1.30e-14		
2v0uA	146	1.40e-14		
2z6cA	129	1.46e-14		
2wkqA	332	5.21e-14		
2wkpA	332	7.24e-14		
2wkrA	332	7.76e-14		
1x0oA	119	1.04e-13		
3h9wA	115	1.46e-13		
2pr5A	132	2.75e-13		
3ewkA	227	3.40e-13		
1n9lA	109	3.67e-13	d.110.3.6	85468
3f1pA	117	3.73e-13		
3icyA	118	4.35e-13		
3luqA	114	5.45e-13		
3bwlA	126	5.73e-13		
1p97A	114	6.82e-13	d.110.3.7	94382
2r78A	117	1.23e-12		
3f1pB	121	1.28e-12		
2pdrA	149	1.46e-12		
2b02A	119	2.44e-12		
2pd8A	149	2.80e-12		
3fc7A	125	3.41e-12		
3d72A	149	3.76e-12		
3eehA	125	3.81e-12		
1bywA	110	1.21e-11	d.110.3.6	40912
1lswA	131	1.26e-11	d.110.3.2	78181
3gdiA	309	1.54e-11		
1v9yA	167	1.70e-11	d.110.3.2	108454
1jnuA	104	1.88e-11	d.110.3.6	71762
3fg8A	118	2.36e-11		
1ew0A	130	2.47e-11	d.110.3.2	40905
3caxA	369	4.25e-11		
1drmA	131	4.75e-11	d.110.3.2	40908
1xj4A	119	5.94e-11	d.110.3.2	122027
3a0sA	96	6.39e-11		
3a0vA	96	7.69e-11		
3b33A	115	8.01e-11		
2vv6A	119	1.11e-10		
1w25A	459	1.21e-10	c.23.1.1,c.23.1.1,d.58.29.2	114090,114091,114092
2jheA	190	3.85e-10		
1ll8A	114	7.67e-10	d.110.3.5	78089
3ezuA	342	9.29e-10		
2qkpA	151	6.09e-09		
2vlgA	111	8.96e-09		
3pyp	125	0.01452		
1nwzA	125	0.01636	d.110.3.1	86370
1mzuA	129	0.01930	d.110.3.1	79714
2o9cA	342	0.4149	d.110.2.1,d.110.3.9	148684,148685
1ztuA	341	1.983	d.110.2.1,d.110.3.9	146024,146025
2oolA	337	2.384	d.110.2.1,d.110.3.9	148932,148933
3fosA	214	3.234		
2veaA	520	4.121	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
2qhkA	174	4.364		
3c8cA	240	6.777		
2eg2A	112	7.739		
3bzqA	114	13.14		
2o66A	135	14.81		
1oj5A	132	23.74	d.110.3.8	93087
3dmaA	343	24.36		
2gw8A	114	24.36		
2hzqA	174	34.06		
2cx4A	164	38.65	c.47.1.10	130973
3a2vA	249	38.86		
1nwwA	149	41.94	d.17.4.8	86306
1gnkA	112	45.32	d.58.5.1	39073
2w1rA	123	54.40		
1jg5A	83	57.89	d.205.1.1	66666
1kbpA	432	58.80	b.1.12.1,d.159.1.1	22349,42068
1tvlA	454	64.86	c.1.16.4	107366
2c0dA	221	66.39		
3ighX	486	68.80		
2a2lA	145	71.19	d.110.9.1	126035
1x8qA	184	73.70	b.60.1.1	114966
3id4A	93	75.41		
2r8rA	228	77.36		
3by9A	260	78.16		
1uf5A	303	78.51	d.160.1.2	107808
1yexA	186	79.89	c.47.1.10	123021
1xvwA	160	82.44	c.47.1.10	122387
2fk4A	75	85.92	g.90.1.1	147040
1uc8A	280	86.87	c.30.1.6,d.142.1.7	99165,99166