# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gj3A	120	1.39e-14		
2v0uA	146	1.52e-14		
3lyxA	124	1.56e-14		
2z6cA	129	1.69e-14		
2wkqA	332	6.23e-14		
2wkrA	332	9.93e-14		
2wkpA	332	1.03e-13		
1x0oA	119	1.35e-13		
3h9wA	115	1.83e-13		
2pr5A	132	2.76e-13		
3ewkA	227	3.24e-13		
1n9lA	109	4.30e-13	d.110.3.6	85468
3f1pA	117	4.99e-13		
3icyA	118	5.18e-13		
3luqA	114	5.23e-13		
3bwlA	126	6.71e-13		
1p97A	114	9.99e-13	d.110.3.7	94382
2r78A	117	1.39e-12		
3f1pB	121	1.44e-12		
2pdrA	149	1.52e-12		
2b02A	119	2.94e-12		
2pd8A	149	3.07e-12		
3d72A	149	3.71e-12		
3fc7A	125	3.84e-12		
3eehA	125	5.72e-12		
1lswA	131	1.04e-11	d.110.3.2	78181
1bywA	110	1.69e-11	d.110.3.6	40912
3gdiA	309	1.91e-11		
1v9yA	167	1.95e-11	d.110.3.2	108454
1jnuA	104	2.31e-11	d.110.3.6	71762
1ew0A	130	2.65e-11	d.110.3.2	40905
3fg8A	118	3.73e-11		
1w25A	459	3.83e-11	c.23.1.1,c.23.1.1,d.58.29.2	114090,114091,114092
1drmA	131	4.15e-11	d.110.3.2	40908
3caxA	369	5.25e-11		
1xj4A	119	5.97e-11	d.110.3.2	122027
3a0sA	96	7.30e-11		
3b33A	115	8.96e-11		
3a0vA	96	9.28e-11		
2vv6A	119	1.08e-10		
3ezuA	342	3.88e-10		
2jheA	190	5.35e-10		
1ll8A	114	9.52e-10	d.110.3.5	78089
2vlgA	111	9.72e-09		
2qkpA	151	1.23e-08		
3pyp	125	0.01466		
1nwzA	125	0.01500	d.110.3.1	86370
1mzuA	129	0.01832	d.110.3.1	79714
2o9cA	342	0.3440	d.110.2.1,d.110.3.9	148684,148685
2oolA	337	1.615	d.110.2.1,d.110.3.9	148932,148933
1ztuA	341	2.365	d.110.2.1,d.110.3.9	146024,146025
2veaA	520	2.942	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
2qhkA	174	4.616		
3fosA	214	5.471		
3c8cA	240	6.985		
2eg2A	112	8.946		
3bzqA	114	13.96		
2o66A	135	15.08		
3dmaA	343	17.48		
2hzqA	174	24.60		
2gw8A	114	24.91		
3a2vA	249	31.49		
1oj5A	132	31.80	d.110.3.8	93087
2cx4A	164	33.08	c.47.1.10	130973
1nwwA	149	40.82	d.17.4.8	86306
1jg5A	83	46.24	d.205.1.1	66666
1gnkA	112	47.42	d.58.5.1	39073
2w1rA	123	52.16		
1kbpA	432	53.03	b.1.12.1,d.159.1.1	22349,42068
1lyqA	104	53.19	b.1.18.17	78302
2c0dA	221	56.78		
1tvlA	454	60.04	c.1.16.4	107366
1x8qA	184	60.43	b.60.1.1	114966
2r8rA	228	61.28		
3ighX	486	65.23		
3id4A	93	73.36		
2fk4A	75	74.78	g.90.1.1	147040
3lheA	143	76.71		
3by9A	260	77.33		
1ocvA	125	79.76	d.17.4.3	86810
1uf5A	303	81.16	d.160.1.2	107808
2p7jA	287	84.10	d.110.6.2,d.110.6.2	149287,149288
1yexA	186	85.40	c.47.1.10	123021
2a2lA	145	86.87	d.110.9.1	126035