# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lyxA	124	7.23e-16		
2gj3A	120	1.33e-15		
2v0uA	146	1.36e-15		
2z6cA	129	3.64e-15		
2wkqA	332	7.66e-15		
2wkpA	332	1.26e-14		
2wkrA	332	1.69e-14		
3h9wA	115	1.89e-14		
1x0oA	119	3.44e-14		
2pr5A	132	3.47e-14		
3ewkA	227	4.39e-14		
3f1pA	117	9.08e-14		
1p97A	114	1.52e-13	d.110.3.7	94382
1n9lA	109	1.56e-13	d.110.3.6	85468
3f1pB	121	1.92e-13		
3bwlA	126	2.57e-13		
2r78A	117	3.32e-13		
3luqA	114	3.45e-13		
2pdrA	149	3.96e-13		
1lswA	131	4.01e-13	d.110.3.2	78181
2b02A	119	7.10e-13		
2pd8A	149	7.38e-13		
3eehA	125	8.76e-13		
1ew0A	130	8.76e-13	d.110.3.2	40905
3d72A	149	9.34e-13		
3fc7A	125	1.04e-12		
1drmA	131	1.34e-12	d.110.3.2	40908
3icyA	118	4.13e-12		
1jnuA	104	4.34e-12	d.110.3.6	71762
1bywA	110	5.14e-12	d.110.3.6	40912
3fg8A	118	5.26e-12		
1v9yA	167	8.30e-12	d.110.3.2	108454
2vv6A	119	9.11e-12		
1xj4A	119	1.02e-11	d.110.3.2	122027
3b33A	115	4.27e-11		
3a0sA	96	4.91e-11		
3caxA	369	5.58e-11		
3a0vA	96	5.94e-11		
1w25A	459	7.33e-11	c.23.1.1,c.23.1.1,d.58.29.2	114090,114091,114092
3gdiA	309	1.43e-10		
3ezuA	342	4.15e-10		
1ll8A	114	7.91e-10	d.110.3.5	78089
2jheA	190	1.71e-09		
2vlgA	111	2.28e-09		
2qkpA	151	1.55e-07		
3pyp	125	0.006864		
1nwzA	125	0.006963	d.110.3.1	86370
1mzuA	129	0.02793	d.110.3.1	79714
2o9cA	342	0.1708	d.110.2.1,d.110.3.9	148684,148685
2oolA	337	0.3505	d.110.2.1,d.110.3.9	148932,148933
2veaA	520	1.146	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
1ztuA	341	1.194	d.110.2.1,d.110.3.9	146024,146025
3fosA	214	5.978		
2qhkA	174	8.998		
3c8cA	240	12.23		
2w1rA	123	13.11		
2zc3A	168	18.94		
1w1hA	151	29.48	b.55.1.1	114076
2eg2A	112	31.27		
1rie	129	34.18		
3ighX	486	34.21		
2o66A	135	34.29		
1v0aA	178	35.33	b.18.1.30	119815
2egjA	128	36.91		
1uc8A	280	39.44	c.30.1.6,d.142.1.7	99165,99166
3hcwA	295	45.12		
3by9A	260	46.11		
3by8A	142	47.67	d.110.6.1	155722
1qzpA	68	57.74	a.14.1.1	96654
1oj5A	132	57.92	d.110.3.8	93087
2pii	112	58.72		
2gw8A	114	59.36		
3bzqA	114	60.89		
2z2mA	168	62.46		
1lyqA	104	62.79	b.1.18.17	78302
2hzqA	174	75.82		
2o0jA	385	76.75		
3huuA	305	77.08		
2kr5A	89	77.60		
1vqoK	132	79.23	b.39.1.1	120372
1ujsA	88	83.03	a.14.1.1	99467
1b5qA	472	85.57	c.3.1.2,d.16.1.5	30404,37968