# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2v0uA 146 6.62e-18 3lyxA 124 1.56e-17 2z6cA 129 2.22e-17 2gj3A 120 2.25e-17 2wkqA 332 2.57e-16 2wkpA 332 2.60e-16 3ewkA 227 3.58e-16 2wkrA 332 4.29e-16 1x0oA 119 4.59e-16 3h9wA 115 4.91e-16 2pr5A 132 6.48e-16 1n9lA 109 1.33e-15 d.110.3.6 85468 3f1pA 117 1.40e-15 3icyA 118 2.03e-15 2pdrA 149 2.52e-15 3f1pB 121 3.45e-15 1p97A 114 3.56e-15 d.110.3.7 94382 2b02A 119 4.92e-15 3bwlA 126 7.16e-15 3luqA 114 8.91e-15 2pd8A 149 1.12e-14 3d72A 149 1.31e-14 1ew0A 130 1.84e-14 d.110.3.2 40905 1lswA 131 2.55e-14 d.110.3.2 78181 3fc7A 125 2.65e-14 3gdiA 309 3.03e-14 2r78A 117 3.19e-14 1drmA 131 3.45e-14 d.110.3.2 40908 1bywA 110 4.68e-14 d.110.3.6 40912 1jnuA 104 8.03e-14 d.110.3.6 71762 1v9yA 167 1.43e-13 d.110.3.2 108454 1xj4A 119 1.83e-13 d.110.3.2 122027 2vv6A 119 1.88e-13 3eehA 125 2.59e-13 3caxA 369 4.14e-13 3b33A 115 4.32e-13 3fg8A 118 5.26e-13 3a0sA 96 8.03e-13 3a0vA 96 9.62e-13 1w25A 459 1.53e-12 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 1ll8A 114 4.70e-12 d.110.3.5 78089 3ezuA 342 3.02e-11 2jheA 190 3.85e-11 2qkpA 151 7.07e-11 2vlgA 111 1.79e-10 1nwzA 125 0.001974 d.110.3.1 86370 3pyp 125 0.002115 1mzuA 129 0.003929 d.110.3.1 79714 2o9cA 342 0.1516 d.110.2.1,d.110.3.9 148684,148685 2oolA 337 0.3922 d.110.2.1,d.110.3.9 148932,148933 3fosA 214 0.4697 1ztuA 341 0.7755 d.110.2.1,d.110.3.9 146024,146025 2veaA 520 1.444 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 2qhkA 174 1.860 3c8cA 240 5.853 1oj5A 132 7.936 d.110.3.8 93087 2cx4A 164 10.60 c.47.1.10 130973 3e5zA 296 11.93 1uc8A 280 18.20 c.30.1.6,d.142.1.7 99165,99166 2eg2A 112 18.26 2w1rA 123 18.32 2hzqA 174 20.86 2ywnA 157 26.47 1jg5A 83 27.25 d.205.1.1 66666 3a2vA 249 30.11 3dmaA 343 31.96 3by9A 260 35.71 3by8A 142 38.31 d.110.6.1 155722 1lyqA 104 38.56 b.1.18.17 78302 3ighX 486 39.04 2c0dA 221 39.76 3bzqA 114 39.86 1yexA 186 41.15 c.47.1.10 123021 1whiA 122 42.69 b.39.1.1 24810 2o66A 135 42.83 1vqoK 132 43.52 b.39.1.1 120372 1nwwA 149 45.69 d.17.4.8 86306 1xzwA 426 47.11 b.1.12.1,d.159.1.1 116270,116271 2zdhA 319 48.47 1wjxA 122 51.55 b.111.1.1 114716 3bwhA 245 51.65 3drnA 161 51.84 1wosA 364 52.07 b.44.2.1,d.250.1.1 109468,109469 3e1eA 141 53.00 1x8qA 184 53.14 b.60.1.1 114966 1whi 122 55.73 3m0fA 213 56.17 3id4A 93 56.27 2pn8A 211 56.48 2iwbA 246 57.95 1kbpA 432 58.88 b.1.12.1,d.159.1.1 22349,42068 1e8nA 710 61.50 b.69.7.1,c.69.1.4 27675,34643 3lheA 143 63.22 1xvwA 160 64.46 c.47.1.10 122387 1ocvA 125 64.54 d.17.4.3 86810 2p7jA 287 72.69 d.110.6.2,d.110.6.2 149287,149288 3dxoA 121 73.96 d.17.4.19 157933 2zctA 249 76.44 c.47.1.10 154343 3id2A 90 76.48 1is8K 84 76.65 d.205.1.1 66331 1auvA 311 79.14 c.30.1.5,d.142.1.3 31723,41558 2gw8A 114 86.78