# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 3.80e-20 2z6cA 129 1.69e-19 2v0uA 146 1.95e-18 2wkrA 332 2.89e-18 2gj3A 120 6.01e-18 2wkpA 332 8.90e-18 2wkqA 332 9.06e-18 3h9wA 115 5.40e-17 2pdrA 149 7.43e-17 3ewkA 227 9.21e-17 1x0oA 119 1.16e-16 2pr5A 132 1.40e-16 3icyA 118 1.77e-16 3bwlA 126 2.18e-16 3eehA 125 2.42e-16 1n9lA 109 2.67e-16 d.110.3.6 85468 3f1pA 117 4.07e-16 3fc7A 125 5.73e-16 1p97A 114 6.12e-16 d.110.3.7 94382 2r78A 117 6.45e-16 3f1pB 121 1.03e-15 3luqA 114 1.60e-15 2b02A 119 2.02e-15 3d72A 149 2.69e-15 2pd8A 149 2.93e-15 1ew0A 130 7.82e-15 d.110.3.2 40905 1lswA 131 1.20e-14 d.110.3.2 78181 1drmA 131 1.54e-14 d.110.3.2 40908 1bywA 110 1.79e-14 d.110.3.6 40912 1jnuA 104 2.16e-14 d.110.3.6 71762 1xj4A 119 3.44e-14 d.110.3.2 122027 3gdiA 309 5.23e-14 1v9yA 167 5.38e-14 d.110.3.2 108454 1w25A 459 6.62e-14 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3caxA 369 9.43e-14 2vv6A 119 1.11e-13 3fg8A 118 1.76e-13 3b33A 115 2.80e-13 3a0sA 96 4.36e-13 3a0vA 96 5.99e-13 2qkpA 151 9.88e-13 1ll8A 114 5.64e-12 d.110.3.5 78089 3ezuA 342 7.07e-12 2vlgA 111 1.34e-10 2jheA 190 2.80e-10 1nwzA 125 0.005078 d.110.3.1 86370 3pyp 125 0.005113 1mzuA 129 0.01107 d.110.3.1 79714 2o9cA 342 0.2598 d.110.2.1,d.110.3.9 148684,148685 1ztuA 341 0.7695 d.110.2.1,d.110.3.9 146024,146025 2qhkA 174 1.056 3fosA 214 1.165 1ef1A 294 3.651 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 3c96A 415 5.186 c.3.1.2,d.16.1.2 156122,156123 2q48A 166 5.905 d.32.1.9 139829 1p0zA 131 5.912 d.110.6.1 93882 1oj5A 132 6.296 d.110.3.8 93087 3c8cA 240 6.774 1yw1A 442 7.332 c.1.16.4 124130 2cx4A 164 7.853 c.47.1.10 130973 2eg2A 112 8.122 3by8A 142 10.23 d.110.6.1 155722 3huuA 305 10.50 3dmaA 343 10.65 1afsA 323 12.77 c.1.7.1 28694 1we0A 187 13.04 c.47.1.10 120930 1aym3 238 14.83 2q88A 257 15.52 1xnzA 264 16.50 d.127.1.1 115673 3a2vA 249 16.60 2v2gA 233 19.44 3di4A 286 20.24 3id3A 89 20.43 1vprA 374 20.90 b.60.1.7 120066 2o66A 135 21.33 1xvwA 160 22.59 c.47.1.10 122387 2gf3A 389 22.82 c.3.1.2,d.16.1.3 135070,135071 2c0dA 221 23.68 1u0tA 307 27.42 e.52.1.1 107567 3ezwA 526 29.03 1n8jA 186 29.26 c.47.1.10 85401 1yexA 186 29.44 c.47.1.10 123021 3gknA 163 29.68 2qt3A 403 29.89 2p4pA 86 30.30 d.145.1.4 149217 2olnA 397 30.89 1tvlA 454 32.26 c.1.16.4 107366 3g7jA 219 33.61 3g0bA 740 34.49 1yuwA 554 34.56 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 3bzqA 114 36.02 2p7jA 287 37.26 d.110.6.2,d.110.6.2 149287,149288 2nujA 163 37.82 d.38.1.1 138608 1okgA 373 37.84 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1t3tA 1303 38.37 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1tyhA 248 39.77 a.132.1.3 107458 2qe8A 343 40.16 1z7gA 217 40.69 c.61.1.1 124624 1nwwA 149 41.13 d.17.4.8 86306 2b18A 164 42.92 3erpA 353 45.36 3bh4A 483 46.68 3dr2A 305 47.21 3lwbA 373 47.65 3lyrA 243 49.16 1fliA 98 49.24 a.4.5.21 16160 1xzwA 426 49.37 b.1.12.1,d.159.1.1 116270,116271 3gdpA 521 49.99 1uf5A 303 51.60 d.160.1.2 107808 1g0uG 252 51.68 d.153.1.4 41952 1qo8A 566 51.96 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1lz1 130 52.30 1ejxC 567 54.66 b.92.1.1,c.1.9.2 83184,83185 1s1pA 331 54.98 c.1.7.1 98350 2z83A 459 55.39 2gw8A 114 55.51 1nsjA 205 55.61 c.1.2.4 28560 2f2uA 402 55.92 1rm6A 769 56.64 d.41.1.1,d.133.1.1 111872,111873 3kxrA 205 57.29 2hzqA 174 58.37 3lorA 160 59.31 2w20A 471 59.86 1a5zA 319 60.01 c.2.1.5,d.162.1.1 30181,42148 2pn8A 211 61.25 2icgA 160 62.73 d.369.1.1 147601 1jg5A 83 62.82 d.205.1.1 66666 3e1eA 141 63.17 1m7vA 363 63.80 d.174.1.1 78748 1o7eA 276 65.22 e.3.1.1 92622 2dyuA 334 65.46 1x1nA 524 65.80 c.1.8.1 121593 2v0hA 456 66.28 3c3dA 311 66.41 2qv6A 268 67.24 3bs6A 280 69.30 1ed8A 449 70.51 c.76.1.1 34988 1o17A 345 72.75 a.46.2.1,c.27.1.1 80765,80766 1b7qA 130 72.87 d.2.1.2 36549 1d8vA 263 73.18 d.165.1.1 42193 2pozA 392 73.43 2zctA 249 74.24 c.47.1.10 154343 1ju2A 536 74.95 c.3.1.2,d.16.1.1 77169,77170 1x31B 404 76.37 1e4eA 343 76.63 c.30.1.2,d.142.1.1 59221,59222 1tuhA 156 76.64 d.17.4.11 107345 2igvA 173 77.08 b.62.1.1 147667 1qniA 581 77.47 b.6.1.4,b.69.3.1 23042,27642 1r13A 148 78.15 d.169.1.1,h.1.1.1 96782,96783 1z3sA 217 78.20 2wcxA 537 78.24 2zdhA 319 79.49 2cfmA 561 79.74 1alhA 446 81.76 c.76.1.1 35016 2pgzA 230 82.11 3lv4A 456 84.48 2bmxA 195 84.85 c.47.1.10 128817 1nd4A 264 85.19 d.144.1.6 91815 3gbyA 128 87.70 1zyeA 220 87.87 c.47.1.10 125817 1pvmA 184 89.80 d.37.1.1,g.41.13.1 144367,95173 1w1hA 151 89.91 b.55.1.1 114076