# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2v0uA	146	3.52e-17		
2z6cA	129	5.82e-17		
3lyxA	124	8.99e-17		
2gj3A	120	1.39e-16		
2wkqA	332	7.94e-16		
2wkpA	332	8.65e-16		
2wkrA	332	1.09e-15		
3h9wA	115	1.22e-15		
3ewkA	227	1.48e-15		
2pr5A	132	1.55e-15		
1x0oA	119	1.89e-15		
3icyA	118	3.76e-15		
1n9lA	109	4.27e-15	d.110.3.6	85468
3f1pA	117	4.73e-15		
1p97A	114	7.58e-15	d.110.3.7	94382
2pdrA	149	1.04e-14		
3f1pB	121	1.06e-14		
3bwlA	126	1.90e-14		
3luqA	114	1.99e-14		
2b02A	119	2.24e-14		
2pd8A	149	4.05e-14		
3d72A	149	4.78e-14		
3fc7A	125	6.03e-14		
2r78A	117	8.74e-14		
1ew0A	130	9.29e-14	d.110.3.2	40905
1lswA	131	9.42e-14	d.110.3.2	78181
1bywA	110	1.25e-13	d.110.3.6	40912
1drmA	131	1.35e-13	d.110.3.2	40908
3gdiA	309	1.35e-13		
1jnuA	104	1.80e-13	d.110.3.6	71762
3eehA	125	2.65e-13		
1v9yA	167	6.07e-13	d.110.3.2	108454
1xj4A	119	6.76e-13	d.110.3.2	122027
2vv6A	119	7.59e-13		
3caxA	369	8.68e-13		
3a0sA	96	1.35e-12		
1w25A	459	1.62e-12	c.23.1.1,c.23.1.1,d.58.29.2	114090,114091,114092
3b33A	115	1.72e-12		
3fg8A	118	1.81e-12		
3a0vA	96	1.88e-12		
1ll8A	114	1.70e-11	d.110.3.5	78089
3ezuA	342	2.63e-11		
2jheA	190	4.44e-11		
2qkpA	151	2.07e-10		
2vlgA	111	4.11e-10		
1nwzA	125	0.004610	d.110.3.1	86370
3pyp	125	0.004946		
1mzuA	129	0.01029	d.110.3.1	79714
2o9cA	342	0.3529	d.110.2.1,d.110.3.9	148684,148685
2oolA	337	0.7305	d.110.2.1,d.110.3.9	148932,148933
3fosA	214	1.015		
1ztuA	341	1.710	d.110.2.1,d.110.3.9	146024,146025
2veaA	520	1.990	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
2qhkA	174	4.220		
3c8cA	240	6.904		
2eg2A	112	9.430		
1oj5A	132	18.81	d.110.3.8	93087
3dmaA	343	22.03		
2o66A	135	22.06		
2cx4A	164	22.49	c.47.1.10	130973
3bzqA	114	25.78		
3a2vA	249	27.72		
1jg5A	83	31.74	d.205.1.1	66666
1uc8A	280	34.60	c.30.1.6,d.142.1.7	99165,99166
1kbpA	432	42.85	b.1.12.1,d.159.1.1	22349,42068
3ighX	486	46.26		
1xzwA	426	47.82	b.1.12.1,d.159.1.1	116270,116271
2w1rA	123	47.91		
2gw8A	114	50.37		
2zdhA	319	50.65		
3by9A	260	50.66		
2c0dA	221	51.18		
1yexA	186	51.35	c.47.1.10	123021
3by8A	142	53.05	d.110.6.1	155722
2hzqA	174	60.27		
1nwwA	149	62.50	d.17.4.8	86306
3e1eA	141	62.98		
3e5zA	296	64.54		
1nsjA	205	66.13	c.1.2.4	28560
1wjxA	122	67.37	b.111.1.1	114716
3m0fA	213	69.43		
1lyqA	104	69.92	b.1.18.17	78302
2vliA	183	70.01		
3id4A	93	74.08		
1rie	129	78.40		
2p7jA	287	81.89	d.110.6.2,d.110.6.2	149287,149288
1is8K	84	86.05	d.205.1.1	66331
1okgA	373	89.24	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252