# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2z6cA	129	1.88e-15		
2v0uA	146	2.06e-15		
3lyxA	124	3.38e-15		
2gj3A	120	4.09e-15		
2wkpA	332	2.49e-14		
1x0oA	119	2.64e-14		
3h9wA	115	3.15e-14		
2wkqA	332	3.23e-14		
2wkrA	332	4.97e-14		
2pr5A	132	5.37e-14		
3ewkA	227	6.74e-14		
3icyA	118	6.82e-14		
1n9lA	109	9.07e-14	d.110.3.6	85468
3f1pA	117	1.49e-13		
1p97A	114	1.57e-13	d.110.3.7	94382
3luqA	114	2.50e-13		
2pdrA	149	2.89e-13		
3f1pB	121	3.34e-13		
2b02A	119	5.40e-13		
3bwlA	126	6.43e-13		
2pd8A	149	6.87e-13		
2r78A	117	8.96e-13		
3d72A	149	9.78e-13		
3fc7A	125	1.24e-12		
3gdiA	309	1.72e-12		
1lswA	131	2.06e-12	d.110.3.2	78181
3eehA	125	2.94e-12		
1ew0A	130	3.65e-12	d.110.3.2	40905
1bywA	110	4.31e-12	d.110.3.6	40912
1jnuA	104	4.83e-12	d.110.3.6	71762
1drmA	131	5.68e-12	d.110.3.2	40908
1v9yA	167	8.71e-12	d.110.3.2	108454
1xj4A	119	1.29e-11	d.110.3.2	122027
3caxA	369	1.48e-11		
1w25A	459	1.61e-11	c.23.1.1,c.23.1.1,d.58.29.2	114090,114091,114092
3fg8A	118	2.13e-11		
2vv6A	119	2.46e-11		
3a0sA	96	2.66e-11		
3b33A	115	2.91e-11		
3a0vA	96	2.99e-11		
3ezuA	342	1.15e-10		
1ll8A	114	2.39e-10	d.110.3.5	78089
2jheA	190	6.97e-10		
2qkpA	151	3.06e-09		
2vlgA	111	5.32e-09		
1mzuA	129	0.02463	d.110.3.1	79714
1nwzA	125	0.02571	d.110.3.1	86370
3pyp	125	0.02571		
2o9cA	342	0.7779	d.110.2.1,d.110.3.9	148684,148685
2oolA	337	2.456	d.110.2.1,d.110.3.9	148932,148933
1ztuA	341	4.413	d.110.2.1,d.110.3.9	146024,146025
2qhkA	174	4.543		
3fosA	214	5.120		
3c8cA	240	7.122		
2eg2A	112	9.026		
2veaA	520	10.15	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
1oj5A	132	12.78	d.110.3.8	93087
2o66A	135	16.69		
3bzqA	114	22.12		
2gw8A	114	23.04		
3a2vA	249	41.16		
1nwwA	149	48.67	d.17.4.8	86306
2c0dA	221	52.17		
1gnkA	112	64.19	d.58.5.1	39073
2hhcA	330	66.00		
1uc8A	280	68.91	c.30.1.6,d.142.1.7	99165,99166
1x8qA	184	69.60	b.60.1.1	114966
1jg5A	83	72.36	d.205.1.1	66666
2cx4A	164	74.75	c.47.1.10	130973
1uf5A	303	76.62	d.160.1.2	107808
1yexA	186	77.34	c.47.1.10	123021
3id4A	93	83.19		
1xzwA	426	83.53	b.1.12.1,d.159.1.1	116270,116271
1zsxA	347	83.70		
1og6A	298	86.28	c.1.7.1	86984