# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lyxA	124	2.36e-16		
2gj3A	120	3.78e-16		
2z6cA	129	5.07e-16		
2v0uA	146	5.20e-16		
3h9wA	115	4.17e-15		
1x0oA	119	4.92e-15		
2pr5A	132	1.01e-14		
3ewkA	227	1.31e-14		
3f1pA	117	1.51e-14		
2wkpA	332	1.63e-14		
3icyA	118	1.92e-14		
1n9lA	109	2.27e-14	d.110.3.6	85468
1p97A	114	2.38e-14	d.110.3.7	94382
2wkqA	332	2.41e-14		
2wkrA	332	3.54e-14		
3f1pB	121	3.62e-14		
3luqA	114	4.51e-14		
3bwlA	126	7.66e-14		
2pdrA	149	1.00e-13		
2b02A	119	1.48e-13		
2r78A	117	1.53e-13		
3eehA	125	3.01e-13		
2pd8A	149	3.11e-13		
3gdiA	309	3.25e-13		
1lswA	131	3.26e-13	d.110.3.2	78181
3fc7A	125	3.58e-13		
3d72A	149	4.19e-13		
1bywA	110	8.22e-13	d.110.3.6	40912
1ew0A	130	8.52e-13	d.110.3.2	40905
1drmA	131	1.04e-12	d.110.3.2	40908
1v9yA	167	1.09e-12	d.110.3.2	108454
1jnuA	104	1.10e-12	d.110.3.6	71762
1xj4A	119	2.08e-12	d.110.3.2	122027
2vv6A	119	3.24e-12		
3fg8A	118	4.72e-12		
3b33A	115	5.44e-12		
3a0sA	96	8.33e-12		
3a0vA	96	9.83e-12		
3caxA	369	1.20e-11		
1w25A	459	2.05e-11	c.23.1.1,c.23.1.1,d.58.29.2	114090,114091,114092
3ezuA	342	2.05e-11		
1ll8A	114	5.39e-11	d.110.3.5	78089
2jheA	190	1.15e-10		
2vlgA	111	1.29e-09		
2qkpA	151	1.42e-09		
3pyp	125	0.006448		
1nwzA	125	0.006969	d.110.3.1	86370
1mzuA	129	0.007904	d.110.3.1	79714
2o9cA	342	0.2991	d.110.2.1,d.110.3.9	148684,148685
2oolA	337	0.4346	d.110.2.1,d.110.3.9	148932,148933
3fosA	214	2.510		
1ztuA	341	3.139	d.110.2.1,d.110.3.9	146024,146025
2qhkA	174	4.099		
1oj5A	132	7.097	d.110.3.8	93087
2veaA	520	7.461	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
2eg2A	112	7.999		
3c8cA	240	10.79		
3bzqA	114	15.80		
2hzqA	174	23.62		
2o66A	135	23.84		
2gw8A	114	28.80		
3a2vA	249	36.10		
2cx4A	164	38.02	c.47.1.10	130973
1vqoK	132	38.07	b.39.1.1	120372
3dmaA	343	40.20		
1jg5A	83	46.70	d.205.1.1	66666
3bwhA	245	49.86		
1whiA	122	54.14	b.39.1.1	24810
3ighX	486	54.47		
1whi	122	57.28		
1okgA	373	58.70	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1kbpA	432	64.48	b.1.12.1,d.159.1.1	22349,42068
1lyqA	104	64.73	b.1.18.17	78302
1yexA	186	66.08	c.47.1.10	123021
2pn8A	211	68.40		
1uf5A	303	70.53	d.160.1.2	107808
1nwwA	149	72.29	d.17.4.8	86306
1xvwA	160	72.65	c.47.1.10	122387
2zc3A	168	74.18		
2kjkA	100	77.44		
2c0dA	221	80.63		
1gnkA	112	81.37	d.58.5.1	39073
2hhcA	330	82.87		
2exnA	136	84.23	b.165.1.1	132562
1qzpA	68	86.18	a.14.1.1	96654
3e5zA	296	86.84		
1l1oC	181	89.68	b.40.4.3	73480