# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gj3A 120 1.73e-16 3lyxA 124 1.77e-16 2z6cA 129 2.52e-16 2v0uA 146 4.39e-16 2wkpA 332 4.74e-15 1x0oA 119 4.77e-15 2wkqA 332 4.82e-15 3h9wA 115 5.45e-15 3ewkA 227 6.25e-15 2pr5A 132 8.00e-15 2wkrA 332 8.77e-15 3icyA 118 1.04e-14 1n9lA 109 1.19e-14 d.110.3.6 85468 1p97A 114 1.26e-14 d.110.3.7 94382 3f1pA 117 1.35e-14 3f1pB 121 2.62e-14 3luqA 114 3.43e-14 3bwlA 126 3.50e-14 2r78A 117 5.77e-14 2pdrA 149 7.37e-14 2b02A 119 9.70e-14 3eehA 125 1.53e-13 2pd8A 149 1.69e-13 3d72A 149 2.24e-13 1lswA 131 2.30e-13 d.110.3.2 78181 3fc7A 125 2.50e-13 3gdiA 309 3.01e-13 1ew0A 130 4.51e-13 d.110.3.2 40905 1bywA 110 6.53e-13 d.110.3.6 40912 1v9yA 167 7.42e-13 d.110.3.2 108454 1jnuA 104 7.59e-13 d.110.3.6 71762 1drmA 131 9.91e-13 d.110.3.2 40908 1xj4A 119 1.59e-12 d.110.3.2 122027 3fg8A 118 1.94e-12 3caxA 369 3.19e-12 2vv6A 119 3.55e-12 3b33A 115 3.95e-12 3a0sA 96 6.84e-12 3a0vA 96 7.02e-12 1w25A 459 9.09e-12 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3ezuA 342 2.81e-11 1ll8A 114 4.01e-11 d.110.3.5 78089 2jheA 190 9.54e-11 2vlgA 111 8.32e-10 2qkpA 151 8.93e-10 1mzuA 129 0.004474 d.110.3.1 79714 1nwzA 125 0.006281 d.110.3.1 86370 3pyp 125 0.006564 2o9cA 342 0.1499 d.110.2.1,d.110.3.9 148684,148685 2oolA 337 0.2909 d.110.2.1,d.110.3.9 148932,148933 1ztuA 341 0.8013 d.110.2.1,d.110.3.9 146024,146025 2veaA 520 1.314 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 2qhkA 174 2.789 3fosA 214 3.600 2eg2A 112 5.270 1oj5A 132 8.790 d.110.3.8 93087 3c8cA 240 10.06 3bzqA 114 12.20 2o66A 135 12.29 2gw8A 114 15.30 3a2vA 249 28.49 3by9A 260 29.83 3dmaA 343 31.87 2cx4A 164 40.18 c.47.1.10 130973 1nwwA 149 42.28 d.17.4.8 86306 1yexA 186 42.55 c.47.1.10 123021 1x8qA 184 46.84 b.60.1.1 114966 2w1rA 123 48.54 2hzqA 174 49.89 3id4A 93 51.25 1jg5A 83 51.50 d.205.1.1 66666 1uc8A 280 52.06 c.30.1.6,d.142.1.7 99165,99166 1uf5A 303 52.88 d.160.1.2 107808 1gnkA 112 53.10 d.58.5.1 39073 3bwhA 245 53.65 1lyqA 104 56.21 b.1.18.17 78302 1xvwA 160 57.27 c.47.1.10 122387 1ocvA 125 58.38 d.17.4.3 86810 2p7jA 287 59.78 d.110.6.2,d.110.6.2 149287,149288 3id2A 90 60.63 1vqoK 132 60.71 b.39.1.1 120372 2c0dA 221 67.22 1gkrA 458 68.42 b.92.1.3,c.1.9.6 70251,70252 1okgA 373 70.50 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 3ighX 486 72.40 2hhcA 330 74.82 1whiA 122 75.83 b.39.1.1 24810 1l1oC 181 75.91 b.40.4.3 73480 2pn8A 211 78.47 1whi 122 80.94 3by8A 142 82.52 d.110.6.1 155722 2a2lA 145 82.87 d.110.9.1 126035 2zpmA 91 84.55 3lheA 143 88.02 1we0A 187 89.11 c.47.1.10 120930