# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2v0uA	146	1.34e-17		
2wkqA	332	5.01e-17		
2wkpA	332	6.39e-17		
2wkrA	332	1.62e-16		
2gj3A	120	2.11e-16		
3lyxA	124	2.31e-16		
2z6cA	129	2.99e-16		
1x0oA	119	4.28e-15		
2pr5A	132	7.98e-15		
3f1pA	117	1.09e-14		
3h9wA	115	1.21e-14		
2pdrA	149	1.24e-14		
3ewkA	227	1.33e-14		
1p97A	114	1.76e-14	d.110.3.7	94382
3bwlA	126	4.57e-14		
3luqA	114	5.59e-14		
2pd8A	149	6.12e-14		
3d72A	149	7.58e-14		
1n9lA	109	1.13e-13	d.110.3.6	85468
3f1pB	121	1.55e-13		
2r78A	117	1.88e-13		
1ew0A	130	2.30e-13	d.110.3.2	40905
3eehA	125	3.48e-13		
1lswA	131	4.36e-13	d.110.3.2	78181
2b02A	119	4.40e-13		
3fc7A	125	5.51e-13		
1drmA	131	1.02e-12	d.110.3.2	40908
3fg8A	118	2.02e-12		
1w25A	459	3.02e-12	c.23.1.1,c.23.1.1,d.58.29.2	114090,114091,114092
1bywA	110	3.50e-12	d.110.3.6	40912
3icyA	118	3.78e-12		
1v9yA	167	7.43e-12	d.110.3.2	108454
3gdiA	309	9.40e-12		
2vv6A	119	1.11e-11		
1jnuA	104	1.20e-11	d.110.3.6	71762
3b33A	115	1.37e-11		
1xj4A	119	1.98e-11	d.110.3.2	122027
3caxA	369	3.24e-11		
3a0sA	96	4.78e-11		
3a0vA	96	8.32e-11		
1ll8A	114	2.93e-10	d.110.3.5	78089
3ezuA	342	4.50e-10		
2jheA	190	1.81e-09		
2vlgA	111	4.38e-09		
2qkpA	151	1.64e-07		
1nwzA	125	0.006552	d.110.3.1	86370
3pyp	125	0.008017		
2o9cA	342	0.06820	d.110.2.1,d.110.3.9	148684,148685
2oolA	337	0.1198	d.110.2.1,d.110.3.9	148932,148933
1ztuA	341	0.1893	d.110.2.1,d.110.3.9	146024,146025
1mzuA	129	0.2214	d.110.3.1	79714
2veaA	520	0.3261	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
3fosA	214	1.611		
3c8cA	240	3.742		
2qhkA	174	7.630		
1e8nA	710	10.22	b.69.7.1,c.69.1.4	27675,34643
2w1rA	123	15.28		
3by8A	142	19.74	d.110.6.1	155722
2a2lA	145	22.96	d.110.9.1	126035
1h2wA	710	23.63	b.69.7.1,c.69.1.4	76596,76597
1lyqA	104	27.16	b.1.18.17	78302
2eg2A	112	31.00		
1h2xA	710	36.19	b.69.7.1,c.69.1.4	76598,76599
2qguA	211	39.85		
3c5cA	187	43.99		
3bzqA	114	45.03		
3k4hA	292	47.50		
3hcwA	295	54.30		
3huuA	305	55.99		
1v0aA	178	59.21	b.18.1.30	119815
2o66A	135	60.46		
3by9A	260	61.39		
1nwwA	149	63.11	d.17.4.8	86306
1x8qA	184	69.67	b.60.1.1	114966
2bklA	695	70.62		
1rie	129	71.04		
2nq2C	253	74.76		
3ighX	486	75.36		
2egjA	128	77.07		
2gw8A	114	88.99