# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lyxA	124	7.50e-16		
2z6cA	129	1.01e-15		
2gj3A	120	1.06e-15		
2v0uA	146	1.28e-15		
2wkqA	332	4.72e-15		
2wkrA	332	6.78e-15		
2wkpA	332	7.32e-15		
3h9wA	115	1.59e-14		
3ewkA	227	1.75e-14		
2pr5A	132	2.39e-14		
1x0oA	119	2.41e-14		
1p97A	114	5.25e-14	d.110.3.7	94382
3f1pA	117	5.66e-14		
3f1pB	121	1.15e-13		
2pdrA	149	1.29e-13		
1n9lA	109	1.38e-13	d.110.3.6	85468
3bwlA	126	1.83e-13		
1lswA	131	2.51e-13	d.110.3.2	78181
2pd8A	149	3.01e-13		
3eehA	125	3.82e-13		
3d72A	149	4.18e-13		
3luqA	114	4.89e-13		
2b02A	119	5.83e-13		
3fc7A	125	7.49e-13		
1ew0A	130	9.81e-13	d.110.3.2	40905
1drmA	131	1.03e-12	d.110.3.2	40908
2r78A	117	1.19e-12		
3icyA	118	1.45e-12		
1bywA	110	1.66e-12	d.110.3.6	40912
1jnuA	104	2.74e-12	d.110.3.6	71762
1xj4A	119	3.16e-12	d.110.3.2	122027
2vv6A	119	4.53e-12		
3fg8A	118	1.07e-11		
3gdiA	309	1.14e-11		
1v9yA	167	2.02e-11	d.110.3.2	108454
3caxA	369	2.51e-11		
3b33A	115	2.75e-11		
3a0sA	96	3.28e-11		
3a0vA	96	4.42e-11		
1w25A	459	4.91e-11	c.23.1.1,c.23.1.1,d.58.29.2	114090,114091,114092
1ll8A	114	8.36e-11	d.110.3.5	78089
3ezuA	342	1.88e-09		
2qkpA	151	8.37e-09		
2vlgA	111	8.92e-09		
2jheA	190	1.59e-08		
3pyp	125	0.02046		
1nwzA	125	0.02280	d.110.3.1	86370
1mzuA	129	0.06570	d.110.3.1	79714
2o9cA	342	1.298	d.110.2.1,d.110.3.9	148684,148685
1ztuA	341	3.392	d.110.2.1,d.110.3.9	146024,146025
3fosA	214	3.685		
2oolA	337	6.380	d.110.2.1,d.110.3.9	148932,148933
2qhkA	174	6.402		
1oj5A	132	6.786	d.110.3.8	93087
2veaA	520	13.90	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
3c8cA	240	16.52		
2a2lA	145	16.97	d.110.9.1	126035
1rie	129	19.69		
2w1rA	123	25.08		
1nwwA	149	26.09	d.17.4.8	86306
3dskA	495	27.15		
2odfA	257	28.29	c.56.5.9	148741
3by9A	260	29.68		
3ighX	486	30.58		
1e8nA	710	35.00	b.69.7.1,c.69.1.4	27675,34643
3by8A	142	41.70	d.110.6.1	155722
2p7jA	287	44.80	d.110.6.2,d.110.6.2	149287,149288
3e5zA	296	48.10		
3grdA	134	53.79		
1h2wA	710	60.64	b.69.7.1,c.69.1.4	76596,76597
2bklA	695	69.92		
2zc3A	168	70.36		
1vajA	214	72.41	d.309.1.1	119907
1o6gA	710	72.86	b.69.7.1,c.69.1.4	81087,81088
2eg2A	112	74.63		
3danA	473	81.92