# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lyxA	124	2.17e-12		
2gj3A	120	2.60e-12		
3h9wA	115	1.19e-10		
1ew0A	130	1.77e-10	d.110.3.2	40905
1lswA	131	2.59e-10	d.110.3.2	78181
1jnuA	104	3.77e-10	d.110.3.6	71762
1n9lA	109	6.45e-10	d.110.3.6	85468
1drmA	131	6.74e-10	d.110.3.2	40908
3f1pB	121	6.96e-10		
2r78A	117	7.31e-10		
3bwlA	126	7.50e-10		
1v9yA	167	8.02e-10	d.110.3.2	108454
2b02A	119	1.01e-09		
3d72A	149	1.14e-09		
1xj4A	119	1.70e-09	d.110.3.2	122027
2vv6A	119	1.79e-09		
2pdrA	149	1.97e-09		
2pd8A	149	2.37e-09		
2pr5A	132	2.49e-09		
3luqA	114	2.91e-09		
1x0oA	119	3.58e-09		
2v0uA	146	4.43e-09		
2z6cA	129	5.02e-09		
3f1pA	117	6.18e-09		
3ewkA	227	8.45e-09		
1bywA	110	1.55e-08	d.110.3.6	40912
3fc7A	125	2.66e-08		
3caxA	369	1.48e-07		
2vlgA	111	1.80e-07		
3eehA	125	2.71e-07		
2wkpA	332	4.84e-07		
1p97A	114	5.51e-07	d.110.3.7	94382
2wkqA	332	6.75e-07		
3b33A	115	7.80e-07		
3fg8A	118	1.12e-06		
2wkrA	332	1.27e-06		
3a0sA	96	3.07e-06		
3a0vA	96	4.48e-06		
2jheA	190	9.70e-06		
2qkpA	151	1.10e-05		
3gdiA	309	1.88e-05		
1ll8A	114	2.76e-05	d.110.3.5	78089
3icyA	118	0.000746		
1nwzA	125	0.001106	d.110.3.1	86370
3pyp	125	0.001458		
1mzuA	129	0.03320	d.110.3.1	79714
2oolA	337	0.6669	d.110.2.1,d.110.3.9	148932,148933
2qhkA	174	2.350		
3c8cA	240	5.022		
3lqnA	150	6.957		
2w1rA	123	7.301		
3by9A	260	11.08		
3fosA	214	14.89		
2vdrB	461	15.27		
1tyeB	440	17.11	b.1.15.1,c.62.1.1,g.16.2.1	112830,112831,112832
1yavA	159	17.38	d.37.1.1	144629
3gfsA	174	17.77		
1repC	251	19.32	a.4.5.10,a.4.5.10	16125,16126
3b42A	135	21.14		
3fnaA	149	21.59		
2p08A	115	22.98		
2fclA	169	23.63	d.218.1.11	133273
1dwkA	156	23.90	a.35.1.4,d.72.1.1	17075,39606
2ek8A	421	27.87		
3gwrA	144	30.06		
2e12A	101	30.48		
1vr9A	213	34.11	d.37.1.1	144433
3fhvA	156	35.98		
1yz1A	174	36.81	b.88.1.2	124264
1y4oA	104	40.33	d.110.7.1	145901
3k6eA	156	41.21		
2qdfA	335	41.39		
1efcA	393	41.50	b.43.3.1,b.44.1.1,c.37.1.8	25680,25720,32113
3h7eA	237	42.12		
1xtzA	264	42.34		
3cwfA	122	44.07		
3bqaA	148	45.95		
1oj5A	132	46.05	d.110.3.8	93087
2cw9A	194	53.84	d.17.4.13	130920
2hjeA	221	53.90	d.110.6.3	147294
3ddjA	296	55.55	d.37.1.1,d.37.1.1	157553,157554
3h3hA	122	56.40		
2axoA	270	58.13	c.47.1.19	127496
3huhA	152	59.17		
3kolA	156	62.02		
1xjo	284	62.89		
2g3wA	182	64.21	c.52.1.33	147077
1p0zA	131	68.99	d.110.6.1	93882
2afdA	88	72.28		
2hq4A	161	74.66	d.342.1.1	147327
1yleA	342	76.08	d.108.1.8	123647
1kllA	130	78.99	d.32.1.2	72720
3lgcA	89	79.28		
3iv4A	112	80.40		
2gxaA	274	81.12		
2d13A	227	83.20	c.26.2.1	131121
3lq9A	134	88.59